PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn119271

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YC

Protein Properties

Length: 249aa MW: 27699.3 Da PI: 5.9697

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn119271	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	172.9	3.3e-54	75	178	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql+ fw++q ie++t+fknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw h+eenkrrtl+k+diaaa+trt+ifdflvd+v Achn119271 75 QLHGFWANQhqdIEQTTEFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWDHTEENKRRTLQKNDIAAAITRTEIFDFLVDVV 173 7899*99999*********************************************************************************** PP NF-YC 97 prdel 101 pr+el Achn119271 174 PREEL 178 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.36E-32	69	169	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.3E-37	89	161	IPR009072	Histone-fold
Pfam	PF00808	5.3E-22	97	160	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDQQGHAQPQ ETGLVPSSSH MPYSSTAYEA TQMMRPPTAA SVGSVQPPQI AGQLAQHQLA 60 YQQIHQQQQQ QLQHQLHGFW ANQHQDIEQT TEFKNHSLPL ARIKKIMKAD EDVRMISAEA 120 PVVFARACEM FILELTLRSW DHTEENKRRT LQKNDIAAAI TRTEIFDFLV DVVPREELKD 180 EVVGAIPSGA LPVGGPGDGL PYYYMPQQVG ALGMFIGKPV DQALYGQQPH PYTAAQMWPQ 240 QQQPPPGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-59	83	175	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	153	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028108154.1	1e-125	nuclear transcription factor Y subunit C-9-like
Refseq	XP_028108155.1	1e-125	nuclear transcription factor Y subunit C-9-like
Swissprot	Q8L4B2	4e-78	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	A0A2R6Q3K4	0.0	A0A2R6Q3K4_ACTCH; Nuclear transcription factor Y subunit C-9 like
STRING	POPTR_0010s03730.1	1e-111	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3422	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	8e-77	nuclear factor Y, subunit C9

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]