PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn120421

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

BBR-BPC

Protein Properties

Length: 302aa MW: 33216.1 Da PI: 10.3208

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn120421	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	316.9	6.5e-97	1	301	1	301
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd....................maflqrdkalaernkalv 75 md ++ ++ rn+++yep lk +lglqlmss ae+ ++ + ++ ++++++ m++ rd+++++ Achn120421 1 MDGNSGMNmRNWAFYEPPMGLKGHLGLQLMSSGAEKPLLGgrsHHPAVMADANGGPFHHHMptngglfhhrvggvsespmpMDY-ARDAWINH------ 92 787777788**********************988755463344444233334456666589999999999********.9**9...... PP GAGA_bind 76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseks 174 ++k+l+ l+ ++ ++ +vl++t++++++q+ l+++ + + + + +ee+ e + + kkr+ +k +k++k kk+kk ++++ Achn120421 93 -SREKYLNPLHGNHH-----HANFSVLPETSEVHHMQM-----LQPTESP--KDD--SIARMEETSAERESVGPLKKRRGSKPQKSPKPKKAKKAPRAP 176 .66788888776554.....346889********.....4443333..333..333444566667777788888888888999999999999999 PP GAGA_bind 175 kkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273 +++ + + +r++a+ ks+++v+ngv++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCC t +S+yPLP+stkrrgaRiagrKmS gafkk+LekLa Achn120421 177 RDDGSVSM--QRARAPPKSMEVVVNGVDIDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCITGMSMYPLPMSTKRRGARIAGRKMSLGAFKKVLEKLA 273 88887777..79*********************************************************************************** PP GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301 +eGy++snp+DL++hWAkHGtnkfvtir Achn120421 274 SEGYNFSNPIDLRTHWAKHGTNKFVTIR 301 *************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.4E-152	1	301	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.1E-103	1	301	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDGNSGMNMR NWAFYEPPMG LKGHLGLQLM SSGAEKPLLG GRSHHPAVMA DANGGPFHHH 60 MPTNGGLFHH RVGGVSESPM PMDYARDAWI NHSREKYLNP LHGNHHHANF SVLPETSEVH 120 HMQMLQPTES PKDDSIARME ETSAERESVG PLKKRRGSKP QKSPKPKKAK KAPRAPRDDG 180 SVSMQRARAP PKSMEVVVNG VDIDISGIPI PVCSCTGTPQ QCYRWGCGGW QSACCITGMS 240 MYPLPMSTKR RGARIAGRKM SLGAFKKVLE KLASEGYNFS NPIDLRTHWA KHGTNKFVTI 300 R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028067716.1	1e-170	protein BASIC PENTACYSTEINE2-like
Swissprot	Q9LDE2	4e-82	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	A0A2R6QIF6	0.0	A0A2R6QIF6_ACTCH; Protein BASIC like
STRING	GLYMA09G30040.4	1e-126	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	3e-82	basic pentacysteine 2

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]