PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn120541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 356aa    MW: 39249.2 Da    PI: 7.6606
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn120541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06115136426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C  f++ G C  Gd C FaHg
  Achn120541 115 VACAEFRK-GACLKGDACEFAHG 136
                 6799****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-4111137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.206112138IPR000571Zinc finger, CCCH-type
SMARTSM0035616146169IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.071146170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMMSDETPRS SPTVQVPPWD LLDDPTATIA SPFNVHVDSN SYDAALAALH RYLPSNAEDC  60
DVPVDAFSCD HFRMFEFKVR KCARARSHDW TECPFAHPGE KARRRDPRRH HYSGVACAEF  120
RKGACLKGDA CEFAHGVFEC WLHPARYRTQ PCKDGTHCRR RVCFFAHTPD QLRVLPQTSP  180
RGSESYEGSP SRLVFDSKGS FGLSPTSTLY SPPVSPPSES PPMSPCGVNS LSELTASVRN  240
LQIGSARMSM SPPSRGIQMG SGYCSPRSPS MLRPGFLSLP STPTRRPARS GLGVFDLWDQ  300
THEEEPVMER VESGKDLRAQ IYAKLSKENS LDRADPAGPG PGPGPDLGWV WELVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109565.11e-164zinc finger CCCH domain-containing protein 20-like
SwissprotO821991e-113C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-113C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2R6PHE30.0A0A2R6PHE3_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_04s0008g00610.t011e-155(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-110C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  4. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  5. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]