PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn121851

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 220aa MW: 24602 Da PI: 8.8619

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn121851	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.9	4.8e-13	73	118	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE++l++ + ++ G+g+W+ I++ + k+R + q+ s+ qky Achn121851 73 LPWTEEEHKLFLLGLQKVGKGDWRGISKNFVKTRKPTQVASHAQKY 118 69*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.483	67	123	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-16	69	124	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-15	70	121	IPR006447	Myb domain, plants
SMART	SM00717	9.3E-9	71	121	IPR001005	SANT/Myb domain
CDD	cd00167	6.41E-9	74	119	No hit	No description
Pfam	PF00249	1.4E-10	74	118	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-10	74	118	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSHSADCAVA GDEIMLFGVR VKVDPMRKSV SMNDLSQYEQ PHESSIAGGG GYASANDTIH 60 RQSSGSRERK RGLPWTEEEH KLFLLGLQKV GKGDWRGISK NFVKTRKPTQ VASHAQKYFL 120 RRNNVNRHRR RSSLFDITTE SITAIPMEEE TVHQETKTQP LLPRTQLLPL ESTNISGSQV 180 LPCQVSVCPV LIPVQIENPM EQLTLGRLDQ EIVAINFQL*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00149	DAP	Transfer from AT1G19000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028064720.1	1e-84	LOW QUALITY PROTEIN: transcription factor MYB1R1-like
Swissprot	Q2V9B0	2e-69	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2R6PU85	1e-154	A0A2R6PU85_ACTCH; Transcription factor MYB1R1 like
STRING	XP_006476696.1	5e-75	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	5e-51	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]