PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn122311

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C3H

Protein Properties

Length: 378aa MW: 42080.1 Da PI: 4.7266

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn122311	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.9	2.5e-11	211	234	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C++f+rtG Ck+ ++CkF+H+p Achn122311 211 EDCSHFMRTGLCKFRSSCKFNHPP 234 89********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.713	207	235	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.16E-5	207	235	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.1E-4	207	234	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-7	211	234	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.2E-4	213	232	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEGSEENHVP KPYTYEEKLT PKQHHQQLGL GLVLQLGLDS GLDLGLQSSP SLDADPNLDQ 60 KFASEDVQTD KIVIYRELES LVSIKLEREI MRLVMDTFSD EGIVEFPNPP EINEEFPNLV 120 LEEKEKVIEI EGAESEAIEK GISCELDVEE QNRDAKGDSA GDGNDGGDSR NQSEKEDGSG 180 NGNVGGETVS VGDSKDGNFV RYQYPRRPDA EDCSHFMRTG LCKFRSSCKF NHPPRRKNQL 240 YRVVINSWFY GVMFLILLKA AKEDAKEKEE NPERPGQTEC KVCVSCECHF CHGDYTSPRS 300 VFPEWSPNAG VQCLRHNCKA PLICTGPNCG HQVNTSFFLQ LLLLGTFVLG STMTRWGTLQ 360 GASMLHRHPM ATFQVSG*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEGSEENHVP KPYTYEEKLT PKQHHQQLGL GLVLQLGLDS GLDLGLQSSP SLDADPNLDQ  60
KFASEDVQTD KIVIYRELES LVSIKLEREI MRLVMDTFSD EGIVEFPNPP EINEEFPNLV  120
LEEKEKVIEI EGAESEAIEK GISCELDVEE QNRDAKGDSA GDGNDGGDSR NQSEKEDGSG  180
NGNVGGETVS VGDSKDGNFV RYQYPRRPDA EDCSHFMRTG LCKFRSSCKF NHPPRRKNQL  240
YRVVINSWFY GVMFLILLKA AKEDAKEKEE NPERPGQTEC KVCVSCECHF CHGDYTSPRS  300
VFPEWSPNAG VQCLRHNCKA PLICTGPNCG HQVNTSFFLQ LLLLGTFVLG STMTRWGTLQ  360
GASMLHRHPM ATFQVSG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6PS98	1e-153	A0A2R6PS98_ACTCH; Zinc finger CCCH domain-containing protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	7e-12	C3H family protein