PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn122381
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 237aa    MW: 26341.4 Da    PI: 8.7293
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn122381genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000779101123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C k F ++  L  H++ H
  Achn122381  79 FECQYCFKEFGNSQALGGHQNAH 101
                 89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-675106No hitNo description
Gene3DG3DSA:3.30.160.603.7E-575105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.17779106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEKDVSNLLS LTGDGDNEQP SKSCAEKKLR LFGFELDPNK NNQTSLKVSV ERDESVNSST  60
SVSFGKEKRS TNKPGEKKFE CQYCFKEFGN SQALGGHQNA HKKERMKKKR FQIQARKASI  120
NYYLQPLRNS YSFSYFCDPS CYAPDFSQNV SQISFGRADL DAHLSGSQAP TWHDVPVEVA  180
AFQPNTCGFT LTCGDRSGES QPAVFKPGSK RQCKSLDLQL GLSMHSNIES SFRSGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631292.21e-88PREDICTED: zinc finger protein 5 isoform X2
TrEMBLA0A2R6P3M31e-173A0A2R6P3M3_ACTCH; Zinc finger protein
STRINGVIT_01s0026g00850.t011e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-21zinc finger protein 5