PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn123451

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 173aa MW: 20044.8 Da PI: 6.9115

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn123451	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	116	139	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp C k+F+r n+++H ++ H Achn123451 116 FSCPLCFKTFNRYNNMQTHYKRkH 139 89*******************999 PP
2	zf-C2H2	16.2	2.9e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cgk F + + ++H +++ Achn123451 144 YMCRKCGKAFAVRGDWRTHEKNC 166 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.59E-11	112	162	No hit	No description
SMART	SM00355	0.005	116	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.5E-6	116	140	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13894	6.5E-4	116	139	No hit	No description
PROSITE profile	PS50157	10.554	116	143	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	118	139	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-6	141	164	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	40	144	164	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.995	144	164	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MYSNNNNLYS SASPPLKEAL PLLNLSPTRP NQDQTMEVEE LKKEKEQRET VTVSLHLGLP 60 NPTSDDQMSR LEMMRDKEEE EEEEEEEGVS VVVSPLNKGQ YWIPTPTQIL MGPTQFSCPL 120 CFKTFNRYNN MQTHYKRKHG IKPYMCRKCG KAFAVRGDWR THEKNCGKLW YP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583327.1	3e-57	zinc finger protein WIP2-like
Refseq	XP_023751483.1	5e-57	zinc finger protein WIP2-like
Swissprot	Q8W030	2e-41	ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBL	A0A2R6P861	5e-80	A0A2R6P861_ACTCH; Zinc finger protein
STRING	XP_010031820.1	7e-54	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	5e-35	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]