PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn123481

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

AP2

Protein Properties

Length: 439aa MW: 48183 Da PI: 5.3494

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn123481	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.2	1.8e-12	167	214	5	55
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +r++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Achn123481 167 SIRRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 214 589*********988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	0.021	82	143	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	9.625	108	137	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-7	108	137	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.0E-7	108	137	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.674	161	222	IPR001471	AP2/ERF domain
Pfam	PF00847	3.4E-7	167	214	IPR001471	AP2/ERF domain
CDD	cd00018	1.18E-21	168	222	No hit	No description
SMART	SM00380	7.0E-27	168	228	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.45E-15	170	223	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.0E-15	170	222	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MAESVNNNID NPFQTQAEWN LMNAHGGGGD VPKVADFLGV SSKSESNQSD FVPYNEIHGN 60 ETEYLFSSNN ALVPLPLHNT LGIGTPSNYE LQEIPSNLQS LTLSMGSGGY DKEEKAARAY 120 DLAALKYWGT STSTNFPGIM RLELQISNYE KEVEEMKNMT RQEFVASIRR HHQHGRWQAR 180 IGRVAGNKDL YLGTFSTEEE AAEAYDIAAI KFRGLNAVTN FDMNRYDVKA ILVSNTLPIG 240 GGAAKRLKEA QAIDCSRKRE EMIALGCSGS FHYGSPSSGT LQGYPNFLHH QSASDPQFHQ 300 PQPLLTLQNS EISYYPNDPQ FHQNYLQTQL QLHQQSGSYM HHSNPSSQFY NSYLQNNPVL 360 LHGFMNMGSS SSSVVENSGG YGGYLGNSTV TTAVGSGHEE LAMVKVDYDN MTPGGYGSWS 420 GDSSVQGSNA GVFSMWNE*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MAESVNNNID NPFQTQAEWN LMNAHGGGGD VPKVADFLGV SSKSESNQSD FVPYNEIHGN  60
ETEYLFSSNN ALVPLPLHNT LGIGTPSNYE LQEIPSNLQS LTLSMGSGGY DKEEKAARAY  120
DLAALKYWGT STSTNFPGIM RLELQISNYE KEVEEMKNMT RQEFVASIRR HHQHGRWQAR  180
IGRVAGNKDL YLGTFSTEEE AAEAYDIAAI KFRGLNAVTN FDMNRYDVKA ILVSNTLPIG  240
GGAAKRLKEA QAIDCSRKRE EMIALGCSGS FHYGSPSSGT LQGYPNFLHH QSASDPQFHQ  300
PQPLLTLQNS EISYYPNDPQ FHQNYLQTQL QLHQQSGSYM HHSNPSSQFY NSYLQNNPVL  360
LHGFMNMGSS SSSVVENSGG YGGYLGNSTV TTAVGSGHEE LAMVKVDYDN MTPGGYGSWS  420
GDSSVQGSNA GVFSMWNE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269\|PubMed:15454085, ECO:0000269\|PubMed:15635403, ECO:0000269\|PubMed:16424342, ECO:0000269\|PubMed:20190735}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin accumulation. {ECO:0000269\|PubMed:15454085}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023907398.1	1e-159	AP2-like ethylene-responsive transcription factor PLT2 isoform X1
Swissprot	Q5YGP7	1e-116	PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBL	A0A2R6P8B5	0.0	A0A2R6P8B5_ACTCH; AP2-like ethylene-responsive transcription factor
STRING	cassava4.1_024850m	1e-161	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2246	24	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-105	AP2 family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lee DK,Sieburth LE The bps signal: embryonic arrest from an auxin-independent mechanism in bypass triple mutants. Plant Signal Behav, 2012. 7(6): p. 698-700 [PMID:22580686] Hong LW,Yan DW,Liu WC,Chen HG,Lu YT TIME FOR COFFEE controls root meristem size by changes in auxin accumulation in Arabidopsis. J. Exp. Bot., 2014. 65(1): p. 275-86 [PMID:24277277] Tian H,Jia Y,Niu T,Yu Q,Ding Z The key players of the primary root growth and development also function in lateral roots in Arabidopsis. Plant Cell Rep., 2014. 33(5): p. 745-53 [PMID:24504658] Zhao Q, et al. Sulfur nutrient availability regulates root elongation by affecting root indole-3-acetic acid levels and the stem cell niche. J Integr Plant Biol, 2014. 56(12): p. 1151-63 [PMID:24831283] Huang JB, et al. ROP3 GTPase contributes to polar auxin transport and auxin responses and is important for embryogenesis and seedling growth in Arabidopsis. Plant Cell, 2014. 26(9): p. 3501-18 [PMID:25217509] Yang S, et al. The Arabidopsis SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Targets Directly to PINs and Is Required for Root Stem Cell Niche Maintenance. Plant Cell, 2015. 27(6): p. 1670-80 [PMID:25991732] Jia Y, et al. The Arabidopsis thaliana elongator complex subunit 2 epigenetically affects root development. J. Exp. Bot., 2015. 66(15): p. 4631-42 [PMID:25998905] Zhang M, et al. A tetratricopeptide repeat domain-containing protein SSR1 located in mitochondria is involved in root development and auxin polar transport in Arabidopsis. Plant J., 2015. 83(4): p. 582-99 [PMID:26072661] Shinohara H,Mori A,Yasue N,Sumida K,Matsubayashi Y Identification of three LRR-RKs involved in perception of root meristem growth factor in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(14): p. 3897-902 [PMID:27001831] Ou Y, et al. RGF1 INSENSITIVE 1 to 5, a group of LRR receptor-like kinases, are essential for the perception of root meristem growth factor 1 in Arabidopsis thaliana. Cell Res., 2016. 26(6): p. 686-98 [PMID:27229312] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis . J Integr Plant Biol, 2017. 59(1): p. 30-43 [PMID:28074634] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]