PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn123681
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 235aa    MW: 24558.7 Da    PI: 9.3837
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn123681genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-083661227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt+ C+ +     C++Gd+C+FaHg+
  Achn123681 36 KTRMCNKYNTAEGCRFGDKCHFAHGE 61
                89**********************96 PP
2zf-CCCH391.3e-12203227126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+lC +fa+ G C +GdrC+FaHg
  Achn123681 203 YKTKLCENFAK-GSCTFGDRCHFAHG 227
                 9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.3E-153266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-83365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3663462IPR000571Zinc finger, CCCH-type
SMARTSM003560.0363461IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-43661IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.13E-14101179IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.9E-15107176IPR004088K Homology domain, type 1
SMARTSM003229.8E-11107177IPR004087K Homology domain
PROSITE profilePS5008413.712108172IPR004088K Homology domain, type 1
CDDcd001051.65E-13110172No hitNo description
PfamPF000132.9E-10110174IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.2E-17198232IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-9201232IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-8202228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.272202229IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10203227IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEFGAARKRG RPDAAFNGNG GFKKSKQDGS SPPAVKTRMC NKYNTAEGCR FGDKCHFAHG  60
EWELGKPSIQ SHEDPRDMGP MGGGRFGGGR MEPPAPAGMA AVAGFGASAT AKISVDASLA  120
GAIIGKSGVN SKQICRLTGA KLSIREHESD PNLRNIELEG NFDQIGQASA MVRELIVNLG  180
SVSKPPPMKG HGGPGSAPHG SNYKTKLCEN FAKGSCTFGD RCHFAHGADE LRNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288GGRFGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226694.11e-107PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_028085605.11e-107zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-80C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2R6P8841e-135A0A2R6P884_ACTCH; Zinc finger CCCH domain-containing protein
STRINGcassava4.1_012715m1e-100(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-60C3H family protein