PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn123741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 478aa    MW: 55310.6 Da    PI: 10.5852
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn123741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.3e-091956340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     +W t E++ll++av+++G+++W++Ia +++ + ++ ++
       Achn123741 19 PWGTLEELLLACAVNRHGSENWDSIAVELQRRASRHHL 56
                     7*****************************44444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4351273IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-41251IPR009057Homeodomain-like
SMARTSM007170.00911675IPR001005SANT/Myb domain
SuperFamilySSF466893.18E-51874IPR009057Homeodomain-like
CDDcd001678.78E-51972No hitNo description
PfamPF002497.2E-81971IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.920.109.7E-18242378IPR001487Bromodomain
SMARTSM002973.2E-14255364IPR001487Bromodomain
SuperFamilySSF473705.49E-19264362IPR001487Bromodomain
CDDcd043691.21E-15266359No hitNo description
PfamPF004394.3E-11268348IPR001487Bromodomain
PROSITE profilePS5001411.657274345IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAKRGKEMNQ DREEGTDHPW GTLEELLLAC AVNRHGSENW DSIAVELQRR ASRHHLHAFY  60
SPRNCKQKYR DLRRRFEGGD GGDEKAMVAE LKRLRVAELR REVERRDVSI EFLQLKVRRL  120
KEERERNFKP KEEKEEEEMD QLNEPEGKSR HDIAGKSISG EDSVEGDDRS FNESNSTSNR  180
KAENWVQNRD KRLKHEPGVR VHKPEIFDTV PVRTRLNGEN AEPAESKSRE EEGSGKKKQR  240
RRSGEDEPEG NVSVAKKQIL VKSEPLIKII EIIRSHKNGS LFERRLRSQE TEKYKKMVRQ  300
HMDLHTVQSK LDKGSYLNSQ KKLLRDLLLI FTNAVTFFPN TSPHHTAALE LRQLVTKQIP  360
KTILKPTKPD QNNKPDKTVA LLPIVVCQRR NREKQQPNRD LSGDKKVVVV EKCVKRGLGR  420
RDKTTDLKKG GEDDDEREKE KRRGERDGKR ARPPTRSSLA TAAAAVDSGR LRKRLRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469475RLRKRLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513430.15e-87glutamic acid-rich protein
TrEMBLA0A2R6P8D40.0A0A2R6P8D4_ACTCH; Bromodomain-containing protein
STRINGXP_002513430.12e-86(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.17e-32DNA-binding bromodomain-containing protein