PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn125121

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 270aa MW: 29968 Da PI: 6.4222

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn125121	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2.1e-30	77	135	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ +tY+++Hnh+ Achn125121 77 ADSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLLVTYSSDHNHP 135 69***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-31	70	137	IPR003657	WRKY domain
PROSITE profile	PS50811	32.007	71	137	IPR003657	WRKY domain
SuperFamily	SSF118290	6.41E-26	73	137	IPR003657	WRKY domain
SMART	SM00774	7.4E-36	76	136	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	78	135	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDGRFSHNPF VYEQDAAENS PENSGDSPRS STFGHDTKMA STSSPKRSRR AAQKKVVSVP 60 MGDVEGSRLK GESAPPADSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRVD 120 PTMLLVTYSS DHNHPHPTSK NNHHNHRNNH QQTTTLTAAT PEVTSVSDAI LNSDNEKPVI 180 FDLGEDSLLS TYEFKWFSDL ESTSSTLLES PIMDGGDTDR AMIFSMREED ESLFADLGEL 240 PECSVVFRRR GAFEERRPCD LAPWCGTTG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-22	54	138	6	80	Disease resistance protein RRS1
5w3x_D	1e-22	54	138	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028077632.1	1e-126	probable WRKY transcription factor 65
Swissprot	Q9LP56	6e-81	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A2R6RG97	0.0	A0A2R6RG97_ACTCH; WRKY transcription factor
STRING	PGSC0003DMT400073267	1e-104	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6475	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	3e-74	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]