PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn125421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 949aa    MW: 107186 Da    PI: 9.0972
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn125421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-11795861155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng....kr.....krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++  n+    k+     ++   g ++ +e Aa+a++ a++k++g
  Achn125421 795 SIYRGVTRHRWTGRYEAHLWDkSTWnqNQnkkgKQglaflRTLITGAYDDEEAAARAYDLAALKYWG 861
                 57*******************7777752277773367789*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.02126156IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.139162196IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.6E-5164245IPR011990Tetratricopeptide-like helical domain
PfamPF130418.2E-11165207IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-7165198IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.849197231IPR002885Pentatricopeptide repeat
SuperFamilySSF484523.34E-5198365IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007564.7E-6200232IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.134232266IPR002885Pentatricopeptide repeat
PfamPF130415.4E-10235278IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.5E-8235267IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.1E-5246321IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.756267301IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.0E-5269303IPR002885Pentatricopeptide repeat
SuperFamilySSF484525.5E-5302333IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.536302336IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-5305332IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.6E-13322474IPR011990Tetratricopeptide-like helical domain
PfamPF138124.5E-11332385IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.512339373IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-4341375IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.397374408IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.5E-6376410IPR002885Pentatricopeptide repeat
PfamPF138122.0E-16396458IPR002885Pentatricopeptide repeat
SuperFamilySSF484525.5E-5407613IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137512.441409443IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.4E-7411445IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.493444478IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.3E-9446480IPR002885Pentatricopeptide repeat
PfamPF138120.0027462491IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.358479513IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.6E-13511615IPR011990Tetratricopeptide-like helical domain
PfamPF130416.8E-17514562IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.455514548IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.4E-8516550IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.66549583IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-8551583IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.328584619IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.621620654IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.108690724IPR002885Pentatricopeptide repeat
SuperFamilySSF541711.31E-11795870IPR016177DNA-binding domain
PfamPF008471.7E-8795861IPR001471AP2/ERF domain
PROSITE profilePS5103217.214796869IPR001471AP2/ERF domain
SMARTSM003801.1E-15796875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-10796870IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MATFHHQQIF HPNHSIEPLY SPKPPKTTHN SRRTTVVLVF CKKAKNEEAW KEKKQGSVDY  60
DKGKHNVSVH LSGLRKEDVP RRYRLRVEGD RFQKDWTISE VVRRVSELDR WEDIDGLLNR  120
WVGRFARKNF PVLIKEITQM GSIEHSIHVF HWMKNQKNYC ARNDIYNMMI RLHARHNRAD  180
QALGLFFEMQ EWRCKPDAET YNALINAHGR AGQWRWAMNI VEDMLRAAIP PSRSTYNNLI  240
NACGSSGNWR EALKVCKNMT ENGVGPDLVT HNIVLSAYKS GAQYSKALSY FELMKGTNIR  300
PDTTTLNIVI HCLAKLGQYG KAIDIFNAMR AKRAECHPDI VTFTSIIHLY SMSGQIGNCK  360
AVFNTMRAEG LQPNIVSYNA LIGAYASHGM SYEAQSVFNE IKRNGFRPDI VSYTSLLNAY  420
GRSEQPEKAQ DIFDLMKRNN WKPNVISYNA LIDAYGSNGF LAEAVEVLRE MEQNGVQPNI  480
VSICTLLAAC GRCGQKVKID SILSAAELRG IELNTVAYNS AIGSYMNVGE HEKALKLYGS  540
MRERKVKPDS VTYNVLISGC CKMSKYSEAL EFLEEMMDLK IPLSKEVYSS VICAYSKQAR  600
DWEKVSALLQ EMEMNDVLPD AIACSALMRA FNKGCQPAKV MSVAEFMRDK CIPFNDAAFF  660
EMVSACSMLR DWRTTVNLIK MMEPSLPVIS VGLLNQLLHF IGKSGKIETM MKGLFKLLHF  720
GHDLERVLTS TMTSPSSESA LKAEIGGGET SEGAVAATDQ ISLYRGVKKA KRERGCTAKE  780
RISKMPPCAA GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN QNQNKKGKQG LAFLRTLITG  840
AYDDEEAAAR AYDLAALKYW GPGTLINFPV TDYTRDLEEM QNVSREEYLA SLRSRWDPSL  900
GRMAGPDYFN SIKYGDNDEQ VMESMRVVPI TLGDASKIIS IAHGKLMC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A6e-7919771213441pentatricopeptide repeat protein dPPR-U10
5i9h_A5e-7919771211441pentatricopeptide repeat protein dPPR-U8G2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083681.10.0pentatricopeptide repeat-containing protein At2g41720 isoform X1
SwissprotQ8RWS80.0PP199_ARATH; Pentatricopeptide repeat-containing protein At2g41720
TrEMBLA0A2R6Q4K60.0A0A2R6Q4K6_ACTCH; Pentatricopeptide repeat-containing protein
STRINGEOY092120.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-72AP2 family protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Aryamanesh N, et al.
    The Pentatricopeptide Repeat Protein EMB2654 Is Essential for Trans-Splicing of a Chloroplast Small Ribosomal Subunit Transcript.
    Plant Physiol., 2017. 173(2): p. 1164-1176
    [PMID:28011633]