PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn126071
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 489aa    MW: 54982.9 Da    PI: 9.7547
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn126071genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.63.7e-121321622656
                 -HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  26 saeereeLAkklgLterqVkvWFqNrRakek 56 
                 s+++++ LAk+l+L  rqV vWFqNrRa+ k
  Achn126071 132 SKKQKQVLAKQLNLRPRQVEVWFQNRRARTK 162
                 7899*************************98 PP
2HD-ZIP_I/II89.63.9e-291291962290
  HD-ZIP_I/II  22 ekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +  ++++K+ la++L+l+prqv+vWFqnrRARtk+kq+E++ye Lk+++++l++en+rL+kev+eL+ +
   Achn126071 129 RVGSKKQKQVLAKQLNLRPRQVEVWFQNRRARTKLKQTEVEYELLKKCCETLTDENRRLHKEVQELK-A 196
                  4556799***********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0035114168IPR001356Homeobox domain
PROSITE profilePS5007112.665132164IPR001356Homeobox domain
PfamPF000461.3E-9132162IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-10132170IPR009057Homeodomain-like
CDDcd000862.77E-8132165No hitNo description
SuperFamilySSF466892.17E-10132172IPR009057Homeodomain-like
PROSITE patternPS000270139162IPR017970Homeobox, conserved site
SMARTSM003402.8E-23164207IPR003106Leucine zipper, homeobox-associated
PfamPF021831.3E-9164197IPR003106Leucine zipper, homeobox-associated
SuperFamilySSF577564.36E-5364386IPR001878Zinc finger, CCHC-type
PfamPF000983.0E-4366382IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.4E-4366386IPR001878Zinc finger, CCHC-type
SMARTSM003430.0077366382IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.323366382IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MKKRDWYGTK SQTKCTKTGR VAVNAGTQMK PYLQHLSIST PSSSSFCQVL RSIIKIIPPI  60
RIKCPSSQII GLSSDQDEDQ VGSKIGACKV DGESAVLYRQ ASSVSLSSYS LSSVKREREI  120
SGEEVEEERV GSKKQKQVLA KQLNLRPRQV EVWFQNRRAR TKLKQTEVEY ELLKKCCETL  180
TDENRRLHKE VQELKALNVA APFYVQMPAA TLTMCPSCER IGAAAENASK NLFTIGGKSH  240
FYSPFTHPSA DVVFYFPFIE ILNSLAFLNS DSKRKLEELL QQWSKWHTQN CSSSHDSSEV  300
LKSGEETYFP ALRLGLDNPS SVSFWMDDQT RHHMNREFIA LDGKSVPLYD RGYSLEGGLE  360
IVDASRCFNC GSYNHSLKDC PKPRDNKAVN NARQQQKSRR NQIASSRNPT RYYQNSPKGK  420
YDGLNPGVLD AETRKLLGLG NTRTSVQGLN ATIPENANER RWTSGRSSSN SSRNRTHHKL  480
NHSSDPIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156164RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-54HD-ZIP family protein