PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn126231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 239aa    MW: 27529 Da    PI: 4.9335
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn126231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.88.2e-34261172102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed+e++ ++sw++ng++fvv+++ efa++vLp+ Fkhsnf+SFvRQLn+YgF+k  +++         weF ++ F+kg+++ll++i+
    Achn126231  26 FLLKTYMLVEDPETDPVVSWNANGTAFVVWQPAEFARDVLPTLFKHSNFSSFVRQLNTYGFRKAATSR---------WEFCNDMFRKGERDLLCEIR 113
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Achn126231 114 RRKA 117
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3617110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-3221115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-5222115IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-182649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEFNESENGD GLVEYVMMRK SSPPPFLLKT YMLVEDPETD PVVSWNANGT AFVVWQPAEF  60
ARDVLPTLFK HSNFSSFVRQ LNTYGFRKAA TSRWEFCNDM FRKGERDLLC EIRRRKAWAN  120
KPQPAQSVPK EFDEDQRSSS TSLSSGYSTL MDENKRLKKE NGVLNTELSS MRRKCKELLD  180
LVAVYAVSEK EEEEEEDEED ESPMLFGVRL EVEGARERKR KRAEVRESAS LLLPQSCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-211711511120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023902084.11e-122heat stress transcription factor B-3-like isoform X1
SwissprotO222302e-69HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2R6Q4J41e-174A0A2R6Q4J4_ACTCH; Heat stress transcription factor B-3 like
STRINGPOPTR_0016s05680.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.16e-65heat shock transcription factor B3