PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn126881

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 310aa MW: 34091.5 Da PI: 5.8169

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn126881	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.5e-07	167	193	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L++l+P + Achn126881 167 SHSLAERARREKINARMKLLQDLVPGC 193 8************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.72E-4	161	195	No hit	No description
SuperFamily	SSF47459	4.32E-8	161	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.61	163	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-5	167	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-9	167	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-9	250	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEPISVTDLR SASCGENNVE IGVESFQVGE EIGVESLQLG EEIQRLMAAP PPETASSFTA 60 LLELPPETAM ELLHSPENDE TATKLAGEAH RRLLSPNFTP TFPSDAALLE RASRFSVFAV 120 EKNLIGDSHR GKGSAKKSKN VTNEPTEDGE KLPYVHVRAR RGQATDSHSL AERARREKIN 180 ARMKLLQDLV PGCDKLLSMR LAAVNPRIDF NLDSLLAAED KSTETGNSII NSYGTLTDFI 240 SRFGEEKTTP ALSLHITHYL ATTLRLIQHL CSQISSKWSS EDGLKIHKSL AVYIFGYIVE 300 QQQQHLAEK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002282897.1	2e-66	PREDICTED: transcription factor bHLH48
Swissprot	Q8VZ02	6e-55	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A2R6Q4M6	1e-100	A0A2R6Q4M6_ACTCH; Transcription factor bHLH48 like
STRING	VIT_08s0007g07870.t01	9e-66	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	2e-57	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]