PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn128261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 203aa    MW: 23175.2 Da    PI: 9.9701
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn128261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.71e-09132197271
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 
                 +Y ++Ake GF v k++skk  ++g  ++  ++Cs+ gk++++ ++     + r++ +++C  +l+v ++
  Achn128261 132 YYTRFAKEKGFAVAKRSSKKG-KEGMLKHVILQCSRGGKPRPRGSN---PAKARPQYKMECPVHLNVMRT 197
                 8***************99988.7777*****************999...899999*********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-6132197IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MKQAEQNGRE GKREKRGRRD PLSGVPQPRQ LNHPPTSLHN NGAQSKKTFQ LKKISKKTID  60
STRTPYQPSQ VEWDEEVESW SVDIGEQEEE VSNDSIMKDC VDGKEVNGNF EERVEEPKMG  120
MEFDTHDEAY LYYTRFAKEK GFAVAKRSSK KGKEGMLKHV ILQCSRGGKP RPRGSNPAKA  180
RPQYKMECPV HLNVMRTKIR IS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153KRSSKKGKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1740224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-07FAR1 family protein