PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn128581

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ZF-HD

Protein Properties

Length: 254aa MW: 28324.3 Da PI: 8.4893

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn128581	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.1	3.8e-32	60	117	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +++ Y+eClkNhAas+Gg+a+DGCgEfmps geegt +al C+AC+CHRnFHR+e e e Achn128581 60 KRIFYRECLKNHAASMGGNALDGCGEFMPS-GEEGTLEALLCSACNCHRNFHRKELEGE 117 5789***********************9.999******************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-23	62	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.0E-29	62	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.2E-31	64	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	28.139	64	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.41E-19	173	242	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-31	176	243	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.7E-28	181	237	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MELSSQEVGE IPIPINTSYG HPMIHNHIIP TTISNGPTSV PTTTTAQEAQ AQAQIMPYKK 60 RIFYRECLKN HAASMGGNAL DGCGEFMPSG EEGTLEALLC SACNCHRNFH RKELEGEQNY 120 NCDQFFQRVG RKVILGHPSN ILAGPKAFQA QHMVLPYNVG PMGSESDELD GGGPPPQVVV 180 KKRARTKFTQ EQKEKMLGFA ERVGWKMQKQ EESEVQQFCQ EIGIKRRVLK VWMHNNKHNL 240 AKKNISNSPQ NPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	6e-23	180	239	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021617744.1	1e-103	zinc-finger homeodomain protein 4-like
Swissprot	O64722	6e-71	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	A0A2R6Q1R2	0.0	A0A2R6Q1R2_ACTCH; Zinc-finger homeodomain protein
STRING	cassava4.1_013112m	1e-103	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5154	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	2e-72	homeobox protein 21

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]