PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn128751

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 283aa MW: 31447.3 Da PI: 8.1349

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn128751	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.7e-13	210	255	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +AveYIk+Lq Achn128751 210 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVEYIKDLQ 255 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.173	204	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-16	207	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-11	208	257	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-15	209	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-10	210	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-12	210	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MYGDSRALAS DPAPIFSQNS SPKREQIENS RDPNMNHQEP SNSNSGLLRF RSAPSTLFSN 60 FENGGEKGSI YARCSSPEAL GLTHLGPRSV FSDLETESKP LANGYCLGML SQISEMENES 120 VVGSIFGPSY DSSHFSESFS AMRKDLENDG KLFSSTRNAD LENRTHILSH HLSLPKTSAE 180 MAAMEKLLQF QDTVPCKVRA KRGCATHPRS IAERVRRTRI SERMRKLQDL VPNMDKQTNT 240 ADMLDLAVEY IKDLQKQYKI LSENRASCKC SSMQRPISNL SA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028097990.1	1e-110	transcription factor bHLH130 isoform X2
Swissprot	Q66GR3	2e-71	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2R6Q4N0	1e-158	A0A2R6Q4N0_ACTCH; Transcription factor bHLH130 like
STRING	XP_002532405.1	1e-83	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	9e-70	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]