PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn129161

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 298aa MW: 32739.7 Da PI: 6.4065

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn129161	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.8e-07	190	216	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L++l+P + Achn129161 190 SHSLAERVRREKINARMKLLQDLVPGC 216 79***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.27E-8	184	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.934	186	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-8	189	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-4	190	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.23E-5	190	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEPISGTDLR SASCGEKNVE IGVESLQLSE EIQRLIAPPP PPESAISFTA LLELPPETAM 60 ELLHSPEKDE TAAKFAREGH RRLLSLNSPP VFPSNTALLE RTSRFSVFAA EKNSIGDSHR 120 VKQEAVDSDS NPNYSSDPNN NQKSTKRKER EKKGKGATKK SKSVANGTSE DGETLPYVHV 180 RARPGQATDS HSLAERVRRE KINARMKLLQ DLVPGCDQLL SKRLAAVNPR IDFNVDSLLA 240 AECGSPMDSN FPSMVMPLMC AEGQVNGNEQ QYHQQLWNCD GLHQPVWGRE NNPSFIS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028114858.1	1e-106	transcription factor bHLH48-like isoform X1
TrEMBL	A0A2R6Q4M6	0.0	A0A2R6Q4M6_ACTCH; Transcription factor bHLH48 like
STRING	VIT_08s0007g07870.t01	2e-95	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-60	bHLH family protein