PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn129391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 517aa    MW: 55953.1 Da    PI: 8.7121
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn129391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.1e-1188114127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++ + C +++rtG C yG++C+++H+p
  Achn129391  88 PGVPDCAYYMRTGSCGYGAKCRYNHPP 114
                 5789*********************96 PP
2zf-CCCH38.71.7e-12134160127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C++++rtGtCk+G +CkF+H++
  Achn129391 134 PGEPTCQYYSRTGTCKFGVSCKFHHPK 160
                 57899********************96 PP
3zf-CCCH36.58.2e-12181206227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++++tG+Ck+G +CkF+H++
  Achn129391 181 GEKECSYYLKTGQCKFGITCKFHHPQ 206
                 7899********************97 PP
4zf-CCCH36.77.3e-12337363127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C+++++tG Ck+G++C+++H+p
  Achn129391 337 PGQPDCQYYLKTGDCKFGSSCRYHHPP 363
                 5789*********************97 PP
5zf-CCCH314.4e-10384408226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++ +C+f++++G+Ck+G +CkF H+
  Achn129391 384 GMQPCSFYLQNGHCKFGRTCKFDHP 408
                 7889********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5387115IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-687114IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-989114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-591115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-593114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84133161IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6133160IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-10135160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6137162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5139161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389179207IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5179206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6181207IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9181206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4185206IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6336363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.53336364IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9338363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5341364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4342362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718382410IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6382409IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7384408IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6384413IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5386408IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MLLIANPIKP CKYLPPQINR AVGPWMCIWT ARTIVVKYTE QGSEISMELY GRRTGSESDR  60
PVGPETGLEE SMRRFVFWGR EFMYPERPGV PDCAYYMRTG SCGYGAKCRY NHPPDRSPVG  120
GAVSFTSGEY PERPGEPTCQ YYSRTGTCKF GVSCKFHHPK NDGGSMTNVP LNSYGYPLRP  180
GEKECSYYLK TGQCKFGITC KFHHPQSGGT SMPGPARPFY PTVQPSSLPS TDQYRGISSG  240
YQTVRPLPLP GSYVQGAYGP LLLPPGVVPL PGWSPYSGPV SPALSPVAQP SVVAGSVYGV  300
TQLSSSAPAF TGPYSSFPYP AGPSSSGQNE SVFPERPGQP DCQYYLKTGD CKFGSSCRYH  360
HPPDWVVSKT NCVLSHLGLP LRPGMQPCSF YLQNGHCKFG RTCKFDHPVG TMRYSPSASS  420
LTDMPVAPYM IGSSLSSLAP SFSYSDLRPE FISVSQFDPH SSRMPSSGNT SSSSVGLIFS  480
QTGSASVSDI QPSNQRSAPV NISISTRQGG DVRHSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124636.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-176C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2R6QU710.0A0A2R6QU71_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_07s0104g01460.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-160C3H family protein