PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn131151

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

SRS

Protein Properties

Length: 210aa MW: 22517.5 Da PI: 8.6569

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn131151	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	194.6	3.4e-60	4	149	5	153
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaeskke 99 +++CqdCGnqakkdC+h RCRtCCks g+ C+thvkstWvpaa+rre+qq+++ + +++a + ++kr+r ++ sa + + Achn131151 4 GMNCQDCGNQAKKDCVHLRCRTCCKSWGLPCQTHVKSTWVPAARRREKQQREEVSRAQQALLGlvggEMINPKRQR-------ESPGGRGGGSAPPVTG 95 589*******************************************9999998777665444432333333333.......3344444455666778 PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 le+ ++P+ev+++avfrcvr+s++dd++e++aYqtav+igGhvfkGi+ydqG+ Achn131151 96 LEVGHFPPEVNTAAVFRCVRLSAMDDADEQFAYQTAVNIGGHVFKGIIYDQGPV 149 9999**********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.6E-61	4	148	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.8E-26	6	48	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.0E-25	100	148	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MRPGMNCQDC GNQAKKDCVH LRCRTCCKSW GLPCQTHVKS TWVPAARRRE KQQREEVSRA 60 QQALLGLVGG EMINPKRQRE SPGGRGGGSA PPVTGLEVGH FPPEVNTAAV FRCVRLSAMD 120 DADEQFAYQT AVNIGGHVFK GIIYDQGPVS RQAGGGESSS GGGQQPLNLI NATTTNVNIP 180 AATMPYSSMY PTPLCDFLAG TQFFQPPRP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022856966.1	1e-79	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	6e-69	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A2R6R3J1	1e-154	A0A2R6R3J1_ACTCH; Protein SHORT INTERNODES like
STRING	Gorai.002G125600.1	2e-76	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-61	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]