PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn131671

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ERF

Protein Properties

Length: 139aa MW: 15519.3 Da PI: 9.5959

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn131671	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54	4.1e-17	15	65	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+G+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a l+g Achn131671 15 SPYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFHLRG 65 68****99.******9...336********************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.31E-20	15	74	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.102	16	73	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-34	16	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	17	28	IPR001471	AP2/ERF domain
CDD	cd00018	2.47E-25	17	74	No hit	No description
Pfam	PF00847	3.4E-10	17	65	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.8E-29	17	74	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	55	75	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MGEGKNKHRE HKEKSPYRGI RMRKWGKWVA EIREPNKRSR IWLGSYSSPV AAARAYDTAV 60 FHLRGPSAPL NFPEYIAGEE EVRDISAATI RKKAAEVGAR VDAIETAQYH VPSEGNSGRV 120 SEKPDLNEYP NPEKSDGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-15	13	78	11	78	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019082291.1	6e-66	PREDICTED: ethylene-responsive transcription factor ERF011-like
Swissprot	O22174	1e-47	ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBL	A0A2R6R3B2	6e-95	A0A2R6R3B2_ACTCH; Ethylene-responsive transcription factor
STRING	VIT_18s0001g10150.t01	3e-66	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA943	23	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23340.1	4e-50	DREB and EAR motif protein 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sazegari S,Niazi A,Ahmadi FS A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes. Bioinformation, 2015. 11(2): p. 101-6 [PMID:25848171]