PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn131681

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WOX

Protein Properties

Length: 207aa MW: 23803.9 Da PI: 8.9813

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn131681	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.9	5.3e-21	81	140	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+++ r+p+a+++e+++++l +++ ++V++WFqN++a++++ Achn131681 81 TRWNPTQEQIGILEMLYRSgMRTPNAQQIEHITTQLgkygKIEGKNVFYWFQNHKARDRQ 140 7***************99***********************************996 PP
2	Wus_type_Homeobox	118.3	3.5e-38	81	142	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+sG+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaR+rqkq Achn131681 81 TRWNPTQEQIGILEMLYRSGMRTPNAQQIEHITTQLGKYGKIEGKNVFYWFQNHKARDRQKQ 142 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.203	76	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.1E-12	77	145	IPR009057	Homeodomain-like
SMART	SM00389	3.3E-7	78	145	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-18	81	140	IPR001356	Homeobox domain
CDD	cd00086	3.25E-5	81	142	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.5E-8	82	140	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MKVHHQLSRG LFDHEPFLTL DCKRLRPLAP KLIPDAHTHS SVGAAFDLHT FIRPECGPVK 60 LASSPDNHLE TTQVETQPGG TRWNPTQEQI GILEMLYRSG MRTPNAQQIE HITTQLGKYG 120 KIEGKNVFYW FQNHKARDRQ KQKRNNLGLN ATITLDTRGQ VQREYSPYKR KCRTWTFENL 180 EEDKGSCCRE EGDKTLELFP LHPEGR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021689235.1	3e-99	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	5e-69	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A2R6QY44	1e-125	A0A2R6QY44_ACTCH; WUSCHEL-related homeobox like
STRING	EOY14402	3e-96	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6186	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-71	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]