PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn132021

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

BBR-BPC

Protein Properties

Length: 315aa MW: 34922.8 Da PI: 10.0547

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn132021	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	368.4	1.3e-112	1	314	1	301
GAGA_bind 1 mdddgsre..rnkgyyepa..aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla... 92 mdd+g+re r+k+ + l++ +q+m+++aerda+i+ernla+sekkaa+aerd a lqrd+a+aern+al+ rd ++++++++en+++ Achn132021 1 MDDSGHREngRHKPP---QgqWLLHQPSMKQIMAVMAERDAAIQERNLAFSEKKAALAERDLAILQRDSAIAERNNALMARDTAIVTIQYRENTMNrgn 96 999999877787772...222244445556**************************************************************99999 PP GAGA_bind 93 ..salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader. 186 ++p+g+q+++g+k++++ qq l++ p++++ + + ++++++ l ++ a+e + ++ +k++ke k + + kk++k+ kkvk+e+++++ Achn132021 97 msPQCPPGCQISHGVKHMHHPQQnLNHqPHMGEVPHDSGDMHTSDGLSMSPVASEPAKPRQ------TKQTKEAKPRTPSKKPSKTSKKVKREEDQNKm 189 8889**************9855559****999998877665443333222222......23333333333333333333333333333223 PP GAGA_bind 187 ..........skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaae 275 sk ++k +dl+ln+vs+De+ +P PvCsCtG+ r CYkWGnGGWqS+CCttt+S+yPLP+ +++r+aR++grKmS++af+klL+++a+e Achn132021 190 ilgkscggdvSKPDWKGQDLGLNQVSFDETMMPGPVCSCTGIRRPCYKWGNGGWQSSCCTTTMSMYPLPALPNKRHARVGGRKMSGSAFSKLLSRVAGE 288 4444455555************************************************************************************* PP GAGA_bind 276 GydlsnpvDLkdhWAkHGtnkfvtir 301 Gydls pvDLkdhWA+HGtn+++ti+ Achn132021 289 GYDLSIPVDLKDHWARHGTNRYITIK 314 ***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.4E-149	1	314	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	6.0E-99	1	314	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MDDSGHRENG RHKPPQGQWL LHQPSMKQIM AVMAERDAAI QERNLAFSEK KAALAERDLA 60 ILQRDSAIAE RNNALMARDT AIVTIQYREN TMNRGNMSPQ CPPGCQISHG VKHMHHPQQN 120 LNHQPHMGEV PHDSGDMHTS DGLSMSPVAS EPAKPRQTKQ TKEAKPRTPS KKPSKTSKKV 180 KREEDQNKMI LGKSCGGDVS KPDWKGQDLG LNQVSFDETM MPGPVCSCTG IRRPCYKWGN 240 GGWQSSCCTT TMSMYPLPAL PNKRHARVGG RKMSGSAFSK LLSRVAGEGY DLSIPVDLKD 300 HWARHGTNRY ITIK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884822.1	1e-170	protein BASIC PENTACYSTEINE6
Refseq	XP_015884824.1	1e-170	protein BASIC PENTACYSTEINE6
Refseq	XP_015884825.1	1e-170	protein BASIC PENTACYSTEINE6
Refseq	XP_015884826.1	1e-170	protein BASIC PENTACYSTEINE6
Refseq	XP_024930418.1	1e-170	protein BASIC PENTACYSTEINE6
Refseq	XP_024930420.1	1e-170	protein BASIC PENTACYSTEINE6
Refseq	XP_024930421.1	1e-170	protein BASIC PENTACYSTEINE6
Swissprot	Q8L999	1e-133	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A2R6R3J7	0.0	A0A2R6R3J7_ACTCH; Protein BASIC like
STRING	GLYMA04G02860.1	1e-165	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5353	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-130	basic pentacysteine 6