PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn132831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 189aa    MW: 21302.1 Da    PI: 9.7998
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn132831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.4e-33109167159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+++r ++d ++v++tYeg+Hnh+
  Achn132831 109 LDDGYRWRKYGQKAVKNSSHPRSYYRCTHHTCNVKKQIQRLSKDRSIVVTTYEGNHNHP 167
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-3396168IPR003657WRKY domain
SuperFamilySSF1182902.48E-28101168IPR003657WRKY domain
PROSITE profilePS5081128.966104169IPR003657WRKY domain
SMARTSM007742.0E-37109168IPR003657WRKY domain
PfamPF031065.3E-26110167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGEELLTNTN NNVPYLFTPS LPSTPLLNLP LDPQIDHLDI DWASLLSGTF LNGELQNLQL  60
PNVPLVSSTR VNTSEGETCQ KSTKGKGSRS KKAIPPRVAF HTRSSEDVLD DGYRWRKYGQ  120
KAVKNSSHPR SYYRCTHHTC NVKKQIQRLS KDRSIVVTTY EGNHNHPSEK LMETLGPLLK  180
QIQFLSRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-2497166271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115574.13e-82probable WRKY transcription factor 43
SwissprotQ8VWQ49e-55WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A2R6PI641e-136A0A2R6PI64_ACTCH; WRKY transcription factor
STRINGXP_010261390.11e-69(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-55WRKY DNA-binding protein 56