PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn133091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 184aa    MW: 21001.8 Da    PI: 9.183
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn133091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.5e-172072456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                + ++tk+q++ Le  F +n+ +  e++ +LA++l+L+ rq+ +W+qN+Ra++k
  Achn133091 20 KKRLTKDQVRLLEISFTSNKRLEPERKHQLARELDLPPRQIAIWYQNKRARWK 72
                5679************************************************9 PP
2HD-ZIP_I/II111.36.2e-3619110293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+rl+k+qv+lLE sF+++++LeperK++lareL+l prq+a+W+qn+RAR+kt+ lE dy aL+++++  ++e++rLe+eve+L+ el++
   Achn133091  19 NKKRLTKDQVRLLEISFTSNKRLEPERKHQLARELDLPPRQIAIWYQNKRARWKTQSLELDYGALQHRLEVASAEKRRLEREVEKLQGELEK 110
                  79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.3421474IPR001356Homeobox domain
SMARTSM003892.8E-141678IPR001356Homeobox domain
SuperFamilySSF466891.63E-171683IPR009057Homeodomain-like
PfamPF000462.4E-142072IPR001356Homeobox domain
CDDcd000863.46E-142075No hitNo description
Gene3DG3DSA:1.10.10.603.0E-182180IPR009057Homeodomain-like
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSLFHSPNHK HFHPSKHNNK KRLTKDQVRL LEISFTSNKR LEPERKHQLA RELDLPPRQI  60
AIWYQNKRAR WKTQSLELDY GALQHRLEVA SAEKRRLERE VEKLQGELEK AHKVLVSLRP  120
SPPHPHPHPL PLVSSSLSRS YEEGGSGSSS LIEDVSCSWV NSGDLQLEEL YACFMVGDGS  180
NCA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062567.18e-58homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A2R6QCG91e-116A0A2R6QCG9_ACTCH; Homeobox-leucine zipper protein like
STRINGXP_008226425.13e-55(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.14e-26homeobox protein 52