PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn133701
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 140aa    MW: 15683.8 Da    PI: 4.9504
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn133701genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57.4e-181458448
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                en+  r+vtfskRr+g++KKA+EL  L++a+  vi fss g+ y+
  Achn133701 14 ENEAARTVTFSKRRKGLFKKAQELQHLTGADMVVIAFSSAGRPYT 58
                899**************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-20362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.591363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-20474IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-14525IPR002100Transcription factor, MADS-box
PfamPF003194.3E-201458IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-142540IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-144061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGKGKKKIEI KLKENEAART VTFSKRRKGL FKKAQELQHL TGADMVVIAF SSAGRPYTHG  60
CEDTLDKYLN YCEKKDDEKE DPDGCGSQDL GSWLEGIKVE ECDSADHLVA VKEALEEIRD  120
RVFMLTPVDE DFVRSLLAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6PU074e-96A0A2R6PU07_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-12AGAMOUS-like 61