PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn134171
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 320aa    MW: 36249.1 Da    PI: 9.6379
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn134171genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.31.4e-53151421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelvv+yLkkkv+  +l++  +i+e+d+yk++Pw+Lp+k+  +e+ewyfFs+rd+ky++g r+nr+++sgyWkatg dk+vl++ +++
  Achn134171  15 LPPGFRFHPTDEELVVHYLKKKVAWATLPV-AIITEIDLYKFDPWELPAKAMFGEQEWYFFSPRDRKYPNGARPNRTATSGYWKATGIDKPVLTSsGTQ 112
                 79****************************.88***************8877899*********************999*************9986788 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kk Lvfy+g+ pkg+kt+W+mheyrl
  Achn134171 113 KVGVKKALVFYRGKPPKGVKTNWIMHEYRL 142
                 8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-647177IPR003441NAC domain
PROSITE profilePS5100561.18715176IPR003441NAC domain
PfamPF023651.6E-2716142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MESTDSSVGS QQPILPPGFR FHPTDEELVV HYLKKKVAWA TLPVAIITEI DLYKFDPWEL  60
PAKAMFGEQE WYFFSPRDRK YPNGARPNRT ATSGYWKATG IDKPVLTSSG TQKVGVKKAL  120
VFYRGKPPKG VKTNWIMHEY RLIDNRAKSK PPGYDAGHSK GSLRLDDWVL CRIYKKNYPS  180
RLIGHEKEDS MTDLPPTIFS IPQNQTPKLP PTKPISYTQI PLLDHDHHLF DEMLSHSSTD  240
TAASLSHLKR TLPPLYWANE SEASKRLHEG TSNETVARTR ENDSSIASLL SQMPQTVMRP  300
IGDGGFRQPY SHPSLNWYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-731217714166NO APICAL MERISTEM PROTEIN
1ut4_B8e-731217714166NO APICAL MERISTEM PROTEIN
1ut7_A8e-731217714166NO APICAL MERISTEM PROTEIN
1ut7_B8e-731217714166NO APICAL MERISTEM PROTEIN
3swm_A1e-721217717169NAC domain-containing protein 19
3swm_B1e-721217717169NAC domain-containing protein 19
3swm_C1e-721217717169NAC domain-containing protein 19
3swm_D1e-721217717169NAC domain-containing protein 19
3swp_A1e-721217717169NAC domain-containing protein 19
3swp_B1e-721217717169NAC domain-containing protein 19
3swp_C1e-721217717169NAC domain-containing protein 19
3swp_D1e-721217717169NAC domain-containing protein 19
4dul_A8e-731217714166NAC domain-containing protein 19
4dul_B8e-731217714166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3190520.0KF319052.1 Actinidia chinensis NAC protein 3 (NAC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028055946.11e-146NAC transcription factor 56-like
SwissprotQ9LD441e-107NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A075EC910.0A0A075EC91_ACTCH; NAC protein 3
STRINGcassava4.1_022751m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-110NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Nieuwenhuizen NJ, et al.
    Natural variation in monoterpene synthesis in kiwifruit: transcriptional regulation of terpene synthases by NAC and ETHYLENE-INSENSITIVE3-like transcription factors.
    Plant Physiol., 2015. 167(4): p. 1243-58
    [PMID:25649633]