PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn134451

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ARR-B

Protein Properties

Length: 679aa MW: 75353.9 Da PI: 7.0298

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn134451	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	27	1e-08	203	225	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 +r++Wt +LH++Fv av+qL G++ Achn134451 203 TRVVWTVDLHRKFVAAVNQL-GID 225 79******************.555 PP
2	Response_reg	78.8	1.8e-26	20	128	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ ++ll+++l+k +y +v++++++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+ +++ + ++ Ga Achn134451 20 VLAVDDDPICLKLLETLLRKCQY-HVTTTSQAIMALKLLRENKnnFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSAYGDTKLVMKGISHGAC 114 799******************.***********888888***************87754.558******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +e+l + Achn134451 115 DYLLKPVRIEQLKN 128 *********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	8.9E-43	17	156	No hit	No description
SuperFamily	SSF52172	4.27E-36	17	141	IPR011006	CheY-like superfamily
SMART	SM00448	3.0E-32	18	130	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	43.383	19	134	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	9.9E-24	20	128	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.42E-27	21	133	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-8	200	226	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MTIDRSFDEP NDQFPVGMRV LAVDDDPICL KLLETLLRKC QYHVTTTSQA IMALKLLREN 60 KNNFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSAYG DTKLVMKGIS HGACDYLLKP 120 VRIEQLKNIW QHVVRRKKTD SKDQNNSDKP CHETEGGQAV TGTGDSDQNG KLNRKKKDQK 180 DDENEDRGDG GHKNEDQSTQ KRTRVVWTVD LHRKFVAAVN QLGIDNSPYL RMGYLNGLGN 240 VPCMVGSAQF QNADVRSLSS SGMLGRLNTP VGLGMRGLSS SGMVQLGHAD NLSEPINNQN 300 KFHQVILPGN QNGNILQGMP MPFEFDQLQH KNVVDHIGDL SSANNGSMVF PISSGLSDGS 360 MNGNSSRNSF LGTPHNPVML QGQPQGIKRD ELRGNQSFVT VASSNREYSS LLPNFRRCID 420 GWPTVQSSEI QSNSFKSSDC FKQDTPNYLI ERKSSIAMDT GNKSNDNSSI AAVPAGFPVL 480 RTDLQSQAAP RQRSNAEKNM NHTEKQGWDE NKANPSHGPN LMCSSMSSNN MIGQQNLVDS 540 STMQHNEVEQ SALGTTANPK QGNLINQRKP QDGYSFDDVG SLEDLVTAMM KQDSALGKQP 600 VGVREPVGKH RLLLSFTREI SLVEWRSCPI RNQSWLLQWR EVGLWALTCL EIRVHVVVRN 660 GVLGFLDHRG YCHEAFFF*

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MTIDRSFDEP NDQFPVGMRV LAVDDDPICL KLLETLLRKC QYHVTTTSQA IMALKLLREN  60
KNNFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSAYG DTKLVMKGIS HGACDYLLKP  120
VRIEQLKNIW QHVVRRKKTD SKDQNNSDKP CHETEGGQAV TGTGDSDQNG KLNRKKKDQK  180
DDENEDRGDG GHKNEDQSTQ KRTRVVWTVD LHRKFVAAVN QLGIDNSPYL RMGYLNGLGN  240
VPCMVGSAQF QNADVRSLSS SGMLGRLNTP VGLGMRGLSS SGMVQLGHAD NLSEPINNQN  300
KFHQVILPGN QNGNILQGMP MPFEFDQLQH KNVVDHIGDL SSANNGSMVF PISSGLSDGS  360
MNGNSSRNSF LGTPHNPVML QGQPQGIKRD ELRGNQSFVT VASSNREYSS LLPNFRRCID  420
GWPTVQSSEI QSNSFKSSDC FKQDTPNYLI ERKSSIAMDT GNKSNDNSSI AAVPAGFPVL  480
RTDLQSQAAP RQRSNAEKNM NHTEKQGWDE NKANPSHGPN LMCSSMSSNN MIGQQNLVDS  540
STMQHNEVEQ SALGTTANPK QGNLINQRKP QDGYSFDDVG SLEDLVTAMM KQDSALGKQP  600
VGVREPVGKH RLLLSFTREI SLVEWRSCPI RNQSWLLQWR EVGLWALTCL EIRVHVVVRN  660
GVLGFLDHRG YCHEAFFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3jte_A	5e-12	19	138	5	125	Response regulator receiver protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250\|UniProtKB:Q940D0, ECO:0000269\|PubMed:17363254, ECO:0000269\|PubMed:20605455}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028073237.1	0.0	two-component response regulator ARR12-like
Swissprot	P62598	1e-106	ARR12_ARATH; Two-component response regulator ARR12
TrEMBL	A0A2R6QZC6	0.0	A0A2R6QZC6_ACTCH; Two-component response regulator
STRING	VIT_04s0008g05900.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2258	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-82	response regulator 12

Publications ? help Back to Top
Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Cortleven A, et al. A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase2 and Arabidopsis histidine kinase3 receptors. Plant Physiol., 2014. 164(3): p. 1470-83 [PMID:24424319] Kim HJ,Kieber JJ,Schaller GE The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signalling. Plant Signal Behav, 2013. 8(12): p. e26434 [PMID:24675172] Choi SH, et al. Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis. Sci Rep, 2014. 4: p. 7197 [PMID:25425016] Jiang L, et al. Strigolactones spatially influence lateral root development through the cytokinin signaling network. J. Exp. Bot., 2016. 67(1): p. 379-89 [PMID:26519957] Cortleven A, et al. Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes. Plant Physiol., 2016. 172(1): p. 464-78 [PMID:27388681] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Kobayashi K,Iwase A Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal. Plant Signal Behav, 2017. 12(6): p. e1338999 [PMID:28594268] Dai X, et al. ARR12 promotes de novo shoot regeneration in Arabidopsis thaliana via activation of WUSCHEL expression. J Integr Plant Biol, 2017. 59(10): p. 747-758 [PMID:28681564] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Yan Z, et al. Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1. Plant Physiol., 2017. 175(3): p. 1438-1454 [PMID:28931628] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]