PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn134501
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 389aa    MW: 43979.3 Da    PI: 6.396
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn134501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.2e-29233291158
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                 ++Dg++WrKYGqK+ k+++ pr+YYrC+++  Cpvkkkv++s++d+++++++YegeHnh
  Achn134501 233 VKDGFQWRKYGQKVTKDNPSPRAYYRCSMSpLCPVKKKVQKSRDDESILVVIYEGEHNH 291
                 58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-29227292IPR003657WRKY domain
PROSITE profilePS5081125.316228294IPR003657WRKY domain
SuperFamilySSF1182901.96E-24231293IPR003657WRKY domain
SMARTSM007749.6E-35233293IPR003657WRKY domain
PfamPF031069.0E-25234291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MLEEAKGGGG GSGDDGGGDY RIGSKWTVLE IDGSYNSGWG NKSKPEDDHM FQVMRTQPLV  60
KTENLESESE RLGRENENLR FLIGIMSSQL KILQEKIQKK KEEQIINTVL NKNNFSYDTN  120
ERIRTEVPTV KISQVFVRAS SEDGSLIENL ESESERLGRE NENLRFLIGI MSSQLKILQE  180
KIQKKKEEQI INTVLNKNNF SYDTNERIRT EVPTVKISQV FVRASSEDGS LIVKDGFQWR  240
KYGQKVTKDN PSPRAYYRCS MSPLCPVKKK VQKSRDDESI LVVIYEGEHN HGSQRAYEIS  300
SSSPCSMTNS SIPNVHRLNA SLDLDLFATN QEIQNPNQNL VEDYNNKGKC KTIEDYVESF  360
TKDPTFSLAL AKMVASSINA QQPNMNHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-202322911371WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6QZC41e-175A0A2R6QZC4_ACTCH; WRKY transcription factor
STRINGVIT_04s0008g05750.t011e-60(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.21e-35WRKY DNA-binding protein 18