PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn134701

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C3H

Protein Properties

Length: 645aa MW: 71361.8 Da PI: 5.7503

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn134701	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.9e-06	199	220	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C ++ar G+Ck G++C+F Hgp Achn134701 199 PCLYYAR-GYCKNGNSCRFFHGP 220 8****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.929	194	221	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0052	196	220	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	198	220	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-4	199	220	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MDAYEATRIV LSRIQNLDPE NASKIMGLLL IQDHGEKEMI RLAFGPESLV HSVVIKARKD 60 LGLASNSPNT PLSPSSPFLP SSLCRQNSSS RLLPSPLSIP NHSWDATNCF SEFSPESLIS 120 PNSSLSSFPP LSSNSSNTSC ALTFYGNGNT DLVDEFQLQD QLSFLNDGSP SLGPKNPDFF 180 YPHHDLATDD SACGFGWKPC LYYARGYCKN GNSCRFFHGP AAADVGSDGG SMVGSPEQCH 240 ELLRSKSAHQ QRLTFPYSAL AANKCMSLLQ QQQSDSPRAL LMGEDMHKFG RSRLDRSEFS 300 MNPGSRQIYL TFPADSTFRE EDVSNYFRKL QQQMERGDFS ACGSPTGLDS RDPYDLQLGG 360 RLLCDAQDVL WRRKLEEQAD LQQAIELQGR RLMGLQLLDV KRPNHYRALS SGAAFPSPIN 420 SPSFFNHTLI PSLDRSGSEV IKENGSNPAM FAPVTVAADQ QSQLAANVDE KERENEKEKE 480 RVKERETYIV ANGSDEKNGN DKESNHKHEE SDYLLESLEH NLPDSPFASP KACGDYLTAL 540 SDTNCEVEKN AVVPAAASAN NNLISTSLLP ATSTLDMASF KSCYFHVPRK IHRIAKRPKI 600 CRETTTTIAI KNTTILLTKI QNAYIRVSVK EVETEYQPLD FNIE*

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MDAYEATRIV LSRIQNLDPE NASKIMGLLL IQDHGEKEMI RLAFGPESLV HSVVIKARKD  60
LGLASNSPNT PLSPSSPFLP SSLCRQNSSS RLLPSPLSIP NHSWDATNCF SEFSPESLIS  120
PNSSLSSFPP LSSNSSNTSC ALTFYGNGNT DLVDEFQLQD QLSFLNDGSP SLGPKNPDFF  180
YPHHDLATDD SACGFGWKPC LYYARGYCKN GNSCRFFHGP AAADVGSDGG SMVGSPEQCH  240
ELLRSKSAHQ QRLTFPYSAL AANKCMSLLQ QQQSDSPRAL LMGEDMHKFG RSRLDRSEFS  300
MNPGSRQIYL TFPADSTFRE EDVSNYFRKL QQQMERGDFS ACGSPTGLDS RDPYDLQLGG  360
RLLCDAQDVL WRRKLEEQAD LQQAIELQGR RLMGLQLLDV KRPNHYRALS SGAAFPSPIN  420
SPSFFNHTLI PSLDRSGSEV IKENGSNPAM FAPVTVAADQ QSQLAANVDE KERENEKEKE  480
RVKERETYIV ANGSDEKNGN DKESNHKHEE SDYLLESLEH NLPDSPFASP KACGDYLTAL  540
SDTNCEVEKN AVVPAAASAN NNLISTSLLP ATSTLDMASF KSCYFHVPRK IHRIAKRPKI  600
CRETTTTIAI KNTTILLTKI QNAYIRVSVK EVETEYQPLD FNIE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006345384.1	1e-162	PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X1
TrEMBL	A0A2R6QKN6	0.0	A0A2R6QKN6_ACTCH; Zinc finger CCCH domain-containing protein
STRING	PGSC0003DMT400017605	1e-162	(Solanum tuberosum)