PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn135681
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24833.3 Da    PI: 9.6669
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn135681genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.8e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+t kl+ey+s
  Achn135681  9 KRIENPINRQVTYSKRRNGIFKKAQELTVLCDAKVSIIMFSNTSKLHEYIS 59
                79***********************************************86 PP
2K-box67.35.3e-2371145175
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                 yqk+ g +l+++++e++q++l+kLk+ ++ L+re+R+++Ge+L++Ls+ eL+ Leq++  sl+ iR++K + l e
  Achn135681  71 YQKTLGIDLWSTHYERMQEHLRKLKEVNNRLRREIRQRMGEELNDLSIHELRGLEQKMSASLTIIRDRKVRNLEE 145
                 78899999*************************************************************887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.889161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-38295IPR002100Transcription factor, MADS-box
CDDcd002658.56E-40280No hitNo description
PRINTSPR004041.6E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1482145IPR002487Transcription factor, K-box
PROSITE profilePS5129712.42984170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGKIEIKR IENPINRQVT YSKRRNGIFK KAQELTVLCD AKVSIIMFSN TSKLHEYISP  60
NISMKKIYDQ YQKTLGIDLW STHYERMQEH LRKLKEVNNR LRREIRQRMG EELNDLSIHE  120
LRGLEQKMSA SLTIIRDRKV RNLEERHGNL LLDFEAKCEL NPQYELVENQ GDYDSAVAFA  180
NGVSNLYDFR LQPNHPNLHH GGGFGSHDLR LA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-16171169MEF2C
5f28_B8e-16171169MEF2C
5f28_C8e-16171169MEF2C
5f28_D8e-16171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1133581e-170HQ113358.1 Actinidia chinensis AP3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267937.11e-125agamous-like MADS-box protein TM6
SwissprotQ003J21e-126TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2R6S2R81e-151A0A2R6S2R8_ACTCH; Floral homeotic protein like
STRINGVIT_04s0023g02820.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.14e-70MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]