PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn136071
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 584aa    MW: 64902.1 Da    PI: 7.6034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn136071genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.6e-13414460455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Achn136071 414 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 460
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.7E-5531219IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85410459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-18413473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.12E-14413464No hitNo description
PfamPF000103.3E-10414460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-18414473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16416465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MVAAVLGNRA FDYLMSSSVS AECSLMSDEN LQNKLSDLVD CPNSAHFSWN YAFFWQISRS  60
RAGDLVLGWG DGSCREPKEG EECEVARIVN FRVEEETQQR MRKRVLQKLH KLFGGLDEDS  120
YAFGLDRVTD TEMFFLASMY FSFPRGEGGP GKSFASGKHI WLSDALKTSS EYCVRSFLAK  180
SAGIQTIVLI PTDVGVVEFG SVRSIPESLE LVQSIRSSFS SFSSRLRVKP MTTVPVVSEK  240
KDKNAQISIL GNGIPKIFGQ DLSSGLSQFR EKLSIKKPEE RPPEAYSNGN RFLLPNARNG  300
LNGSGWTQFH NVKQAATAGI YSPRTPNNLR ELANDVRDEF RLNHYHPQKA ASMQIDFTGG  360
ATSRPSLISR PVSVELEHLD VEASGKDDLA YPSDDKSPRK RGRKPANGRE EPLNHVEAER  420
QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITELQ KKLKDMETER ESFGSASRES  480
LDLEANPNSD NQSRVPDIEI QAVHDEVVVR ASCPMNTHPV SRVIQAFKEA QVAVVESKLA  540
MGNDTIFHTF VIKSQGSEQL TKERLVAAFS RESNSLQTLS SVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-29408470264Transcription factor MYC2
5gnj_B9e-29408470264Transcription factor MYC2
5gnj_E9e-29408470264Transcription factor MYC2
5gnj_F9e-29408470264Transcription factor MYC2
5gnj_G9e-29408470264Transcription factor MYC2
5gnj_I9e-29408470264Transcription factor MYC2
5gnj_M9e-29408470264Transcription factor MYC2
5gnj_N9e-29408470264Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081876.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2R6Q7N90.0A0A2R6Q7N9_ACTCH; Transcription factor bHLH13 like
STRINGVIT_15s0046g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]