PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn136171
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 237aa    MW: 26325.8 Da    PI: 7.3815
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn136171genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-1894144155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+ +l+g
  Achn136171  94 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPAPEMAARAYDVAAYCLKG 144
                 68*****887.**********843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-1294144IPR001471AP2/ERF domain
PROSITE profilePS5103223.32795152IPR001471AP2/ERF domain
SMARTSM003801.2E-3595158IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-2195153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-3195153IPR001471AP2/ERF domain
PRINTSPR003673.6E-1296107IPR001471AP2/ERF domain
CDDcd000181.02E-2996153No hitNo description
PRINTSPR003673.6E-12134154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDVSYKLDRH RHDMLQRRYG ADTVMGQQVQ GRAIQSFHCP CPTCTETRVV FKEHMMKLVS  60
FVMEEPPPPC TEDDPATSTD NRRKSAAVAG TRHPVYRGVR KRRWGKWVSE IREPRKKSRI  120
WLGSFPAPEM AARAYDVAAY CLKGCKAQLN FPEEVELLPK PSTCAARDIQ TAAAMAAKAV  180
VAEKKGSASE SDGGHDDFWG EIELPELNAV SDYLSEVWCW SSCGVTVAGD ATWNDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1890157977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
181102RRKSAAVAGTRHPVYRGVRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835591.13e-71PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI22e-53ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A2R6Q7P21e-131A0A2R6Q7P2_ACTCH; Ethylene-responsive transcription factor
STRINGMigut.N01538.1.p1e-70(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138741314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-53ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]