PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn137671

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 331aa MW: 36983 Da PI: 9.8898

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn137671	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.6e-14	120	164	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I++ + k+Rt+ q+ s+ qky Achn137671 120 PWTEEEHKLFLLGLQKVGKGDWRGISKNFVKTRTPTQVASHAQKY 164 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.985	113	169	IPR017930	Myb domain
SuperFamily	SSF46689	3.44E-17	115	170	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.3E-17	116	167	IPR006447	Myb domain, plants
SMART	SM00717	1.4E-10	117	167	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-11	119	164	IPR009057	Homeodomain-like
Pfam	PF00249	9.2E-12	120	164	IPR001005	SANT/Myb domain
CDD	cd00167	1.44E-9	120	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MLVAQGLFSN NRPSFSAPTK RSFSLYKYHL NPLDRFSIRP PNDRFTKMSH SADCAVAEIM 60 LFGVRVKVDP MRKSVSMNDL SQYEQPHESS IAAVGGGYAS VDDAIHLQSS GSRERKRGVP 120 WTEEEHKLFL LGLQKVGKGD WRGISKNFVK TRTPTQVASH AQKYFLRRNS INRRRRRSSL 180 FDITTESVTA ILMEEETVHQ DTKTQPLLPP TQLLPPESTN ISGSQVLPFQ VSVRPVLIPV 240 QIENPMEQLT LGHLDQGNPE PTKLLWPAHF LPIPNASAAM DVNLNQKSVV DPSQLSLKLS 300 LSSDQNQLSR YSSFQVMSSF NNEDSIISVA *

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028064720.1	1e-116	LOW QUALITY PROTEIN: transcription factor MYB1R1-like
Swissprot	Q2V9B0	8e-85	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2R6PSV2	0.0	A0A2R6PSV2_ACTCH; Transcription factor MYB1R1 like
STRING	EMJ10609	4e-91	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	2e-54	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]