PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn138351

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 554aa MW: 61909.8 Da PI: 4.6561

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn138351	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.3	4e-25	124	171	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s +++s+yF++pi++AAkeL v+lT+LK++CR++GI+RWPhRk+ sl Achn138351 124 LSRNTISQYFYMPITQAAKELHVGLTLLKKRCRELGIRRWPHRKLMSL 171 67899****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.802	107	192	IPR003035	RWP-RK domain
Pfam	PF02042	5.8E-21	124	171	IPR003035	RWP-RK domain
PROSITE profile	PS51292	19.615	345	405	IPR011016	Zinc finger, RING-CH-type
SuperFamily	SSF57850	1.24E-13	351	401	No hit	No description
SMART	SM00744	1.5E-18	352	399	IPR011016	Zinc finger, RING-CH-type
Gene3D	G3DSA:3.30.40.10	1.1E-16	352	400	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF12906	5.4E-12	353	398	IPR011016	Zinc finger, RING-CH-type
Pfam	PF12428	7.3E-21	421	503	IPR022143	Protein of unknown function DUF3675

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MAKQEEYQEA FTFPILPLNF SGYSALDCEY DLSVQESTVF DALLLCSPMD LVPTPNAIQE 60 EFLLAYGNGF GVCNDHEMSS TRFGFEPQSQ PLLLCNNESS THEEYVVGEK KVQRCTNSSK 120 MIVLSRNTIS QYFYMPITQA AKELHVGLTL LKKRCRELGI RRWPHRKLMS LQTLIKNVQE 180 MGKGEGDGDE GRCREAIDIL EQERKLVEES PDTQLHHKTK RLRQECFKAN YKKRKLMGMN 240 MVMVESHDSS STSTNLVNSD AVDQDYDHRV DDDDGDEGEE MSESGFLLSR IVMWEHLVDH 300 LITPKSLQSL QGAEVPGSSR CHTIDPSTSI DMKDVEEYVG ADEEEPLIQM VECRICQEED 360 SIQNLEIPCA CSGSLKFAHR KCVQRWCNEK GDITCEICHQ LLYDVANDCP SPHFTKNTVK 420 ENSFSGDWTI SGSHLNLHDP RLLAMAAAER RLLEAQYDES ADANAGGFAF FRVAVLILMA 480 LLLLRHALTI TTDDDDDAST IFSEAAAAAA ALTATEVAFM IQGAQRRGLQ VTVAPRPTPT 540 PGPAPSPHQE QVQ*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MAKQEEYQEA FTFPILPLNF SGYSALDCEY DLSVQESTVF DALLLCSPMD LVPTPNAIQE  60
EFLLAYGNGF GVCNDHEMSS TRFGFEPQSQ PLLLCNNESS THEEYVVGEK KVQRCTNSSK  120
MIVLSRNTIS QYFYMPITQA AKELHVGLTL LKKRCRELGI RRWPHRKLMS LQTLIKNVQE  180
MGKGEGDGDE GRCREAIDIL EQERKLVEES PDTQLHHKTK RLRQECFKAN YKKRKLMGMN  240
MVMVESHDSS STSTNLVNSD AVDQDYDHRV DDDDGDEGEE MSESGFLLSR IVMWEHLVDH  300
LITPKSLQSL QGAEVPGSSR CHTIDPSTSI DMKDVEEYVG ADEEEPLIQM VECRICQEED  360
SIQNLEIPCA CSGSLKFAHR KCVQRWCNEK GDITCEICHQ LLYDVANDCP SPHFTKNTVK  420
ENSFSGDWTI SGSHLNLHDP RLLAMAAAER RLLEAQYDES ADANAGGFAF FRVAVLILMA  480
LLLLRHALTI TTDDDDDAST IFSEAAAAAA ALTATEVAFM IQGAQRRGLQ VTVAPRPTPT  540
PGPAPSPHQE QVQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-44	RWP-RK domain-containing protein