PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn139261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 226aa    MW: 26154.8 Da    PI: 5.0446
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn139261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.93.3e-132632990
        FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                ++ +fvC keg+re++k++    +++++  rt+C+  + ++ ++ ++kw+++k++ +HnH+l+
  Achn139261  2 INCKFVCGKEGEREKDKRH-PLVKQRQEDMRTNCDVFMYISFKReSSKWVMKKFKDNHNHPLN 63
                5679***********9999.888889999************9988****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-10263IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MINCKFVCGK EGEREKDKRH PLVKQRQEDM RTNCDVFMYI SFKRESSKWV MKKFKDNHNH  60
PLNLPQFIHR MPSQRKLCEV QEMNVDQADD TDMSLKASDD LVIALAGRRE FVGVTQEDQK  120
RYLLQLDIDE MITNIFWADY QMITDYGYFG DVLFDTTFLT DEKMVKLAGR SSECEAAYQL  180
VDETITDLCG NVDNMLLLFA QECSCASGSG SHIELENRRI RCGRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056795.15e-66protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_028124367.16e-66protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-14FAR1-related sequence 5