PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn140021

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

STAT

Protein Properties

Length: 643aa MW: 70937.8 Da PI: 5.3596

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn140021	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	201.5	7.5e-63	205	324	1	120
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfle 99 ldv+llna+g+p++k++evvasLlyad+g+ vek+ddaeapLL+sydG+ef+ drp+kl +Gra+fklkisqLsskcdnr+fri+f+ipk+ +ypf+e Achn140021 205 LDVILLNAFGEPINKEMEVVASLLYADNGADVEKPDDAEAPLLTSYDGIEFACCDRPSKLTKGRAAFKLKISQLSSKCDNRMFRIRFDIPKMGRYPFFE 303 8************************************************************************************************ PP STAT 100 avskpirCisrsrntrssslt 120 a+s+pirCisr+rntr+s l+ Achn140021 304 AFSNPIRCISRNRNTRTSPLM 324 **************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55550	6.09E-7	494	531	IPR000980	SH2 domain
Gene3D	G3DSA:3.30.505.10	1.4E-5	494	534	IPR000980	SH2 domain
PROSITE profile	PS50001	8.565	497	545	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MVEAMVVVAP EVAVAMTWNS EGGSQREPTA RETLERESVV IRKATVMESN SEGTEHDYSS 60 LKDLRLEINS EDRTFSLCFW IFLSDSTPFP STILRQVATG LVRLHIDGEI VGEKLLTTSL 120 SNDSNLQGLS SISLAGTDGD DDRFHGYVHS LEVMSEPSSI KVHFLKDPPL QLSVDSSSAS 180 EIEEDNDGVW SIVGGKASCR RNFSLDVILL NAFGEPINKE MEVVASLLYA DNGADVEKPD 240 DAEAPLLTSY DGIEFACCDR PSKLTKGRAA FKLKISQLSS KCDNRMFRIR FDIPKMGRYP 300 FFEAFSNPIR CISRNRNTRT SPLMSKKLNS GIHLFSGSPS SGLDDGPAEL LYNIVHEAKL 360 NPPMKWVKLG RETSFATRKP DLTMDRADKE CNSHALTANE DDNNAYGSSL ERRPENHEET 420 DNSPSDSESI EARNSDFKSL SGYRSPVSDM EVFKYCLGGL NERALLLKEV STAASEKELA 480 DFAQQVSMYL GCSHHGWIEG FITKEEAESS LQSPGGLQEP GTFVLRFPTS RSWPHPDAGN 540 LVATYIGDLE KHEVHQNPRS FSGERRKGAI VGKRMVLFGG SELRRQCPSS AWNIEGRPLK 600 ITVGMRLPSM SHGTMTRIVA AVKEAASMNS NMLPWIVGNT KL*

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MVEAMVVVAP EVAVAMTWNS EGGSQREPTA RETLERESVV IRKATVMESN SEGTEHDYSS  60
LKDLRLEINS EDRTFSLCFW IFLSDSTPFP STILRQVATG LVRLHIDGEI VGEKLLTTSL  120
SNDSNLQGLS SISLAGTDGD DDRFHGYVHS LEVMSEPSSI KVHFLKDPPL QLSVDSSSAS  180
EIEEDNDGVW SIVGGKASCR RNFSLDVILL NAFGEPINKE MEVVASLLYA DNGADVEKPD  240
DAEAPLLTSY DGIEFACCDR PSKLTKGRAA FKLKISQLSS KCDNRMFRIR FDIPKMGRYP  300
FFEAFSNPIR CISRNRNTRT SPLMSKKLNS GIHLFSGSPS SGLDDGPAEL LYNIVHEAKL  360
NPPMKWVKLG RETSFATRKP DLTMDRADKE CNSHALTANE DDNNAYGSSL ERRPENHEET  420
DNSPSDSESI EARNSDFKSL SGYRSPVSDM EVFKYCLGGL NERALLLKEV STAASEKELA  480
DFAQQVSMYL GCSHHGWIEG FITKEEAESS LQSPGGLQEP GTFVLRFPTS RSWPHPDAGN  540
LVATYIGDLE KHEVHQNPRS FSGERRKGAI VGKRMVLFGG SELRRQCPSS AWNIEGRPLK  600
ITVGMRLPSM SHGTMTRIVA AVKEAASMNS NMLPWIVGNT KL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028051577.1	0.0	SH2 domain-containing protein A-like isoform X4
TrEMBL	A0A1R3JCU3	1e-159	A0A1R3JCU3_9ROSI; Uncharacterized protein
STRING	XP_010274602.1	1e-153	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9394	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17040.1	3e-88	SH2 domain protein A