PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn140391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 224aa    MW: 24600.3 Da    PI: 4.3917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn140391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-17177222250
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                 +y+GVr+++ +g+++AeIrd  ++g  +r++lg+f+t+ eAa+a++ a+
  Achn140391 177 HYRGVRRRP-WGKYAAEIRDR-NRG-GARVWLGTFDTPIEAARAYDCAA 222
                 7********.**********3.322.5*******************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-22176223IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-16177223IPR016177DNA-binding domain
SMARTSM003808.2E-15177223IPR001471AP2/ERF domain
PROSITE profilePS5103220.073177223IPR001471AP2/ERF domain
PfamPF008475.9E-13177222IPR001471AP2/ERF domain
CDDcd000181.10E-23177223No hitNo description
PRINTSPR003672.5E-10178189IPR001471AP2/ERF domain
PRINTSPR003672.5E-10201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTTTDEFLAL ELIRQHLLGD FTSIESFISN LNLTASSNGS VLKPVFSFDE SDLSPSGSSD  60
SNSPVSPPNQ YPSPNSNQDY PNPDFNFFEF ESIPPEFVDV KATRPDAFSG SDLEFFEFDS  120
KPEIVDLMLP GPKIFSGSDL NFSETLNPEI ADVILPGPKT LRGSVAAITG SGQMKRHYRG  180
VRRRPWGKYA AEIRDRNRGG ARVWLGTFDT PIEAARAYDC AAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-19170223760Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ8VZ916e-26EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLA0A2R6RQY81e-159A0A2R6RQY8_ACTCH; Ethylene-responsive transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.14e-28ethylene responsive element binding factor 6