PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn141391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-X1
Protein Properties Length: 839aa    MW: 93598.5 Da    PI: 8.2002
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn141391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.93.7e-07221239119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C++ CHeG+Cp C+
  Achn141391 221 CGNHRCGESCHEGECPRCR 239
                 ******************8 PP
2zf-NF-X118.15.8e-06381400120
    zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                 CG+H C++ C+ G+CppC++
  Achn141391 381 CGRHACKRRCCDGDCPPCSE 400
                 ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578508.24E-765129No hitNo description
PROSITE profilePS500899.25870124IPR001841Zinc finger, RING-type
PROSITE patternPS01359070123IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.01E-5157205No hitNo description
PfamPF014220.067169186IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072169187IPR000967Zinc finger, NF-X1-type
CDDcd060084.07E-6211249No hitNo description
PfamPF014222.4E-4221239IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0025221240IPR000967Zinc finger, NF-X1-type
CDDcd060084.40E-7264307No hitNo description
PfamPF014220.26274292IPR000967Zinc finger, NF-X1-type
SMARTSM004380.058274293IPR000967Zinc finger, NF-X1-type
CDDcd060083.49E-9318367No hitNo description
PfamPF014220.0048328347IPR000967Zinc finger, NF-X1-type
SMARTSM004380.062328348IPR000967Zinc finger, NF-X1-type
CDDcd060082.78E-8371419No hitNo description
PfamPF014228.1E-4381399IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092381400IPR000967Zinc finger, NF-X1-type
CDDcd060083.62E-10398445No hitNo description
PfamPF014220.01408426IPR000967Zinc finger, NF-X1-type
SMARTSM004380.011408427IPR000967Zinc finger, NF-X1-type
SMARTSM0043834465486IPR000967Zinc finger, NF-X1-type
PfamPF014224.6475485IPR000967Zinc finger, NF-X1-type
SMARTSM00438230494539IPR000967Zinc finger, NF-X1-type
PfamPF014220.28576586IPR000967Zinc finger, NF-X1-type
SMARTSM0043825576609IPR000967Zinc finger, NF-X1-type
SMARTSM004380.014619637IPR000967Zinc finger, NF-X1-type
PfamPF014220.4621636IPR000967Zinc finger, NF-X1-type
SMARTSM004384.8682703IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MTSSTHRPAP LPSSDSDADS DTSPTAADLR HTDLSATIFR SYLEITGRSS PDLTKIQSFL  60
TSSRSGALSC LICLERIRPS DPTWSCAERC FAVFHLLCIQ GWARQSSLLA AARAASLWNC  120
PKCRIEYPQT LIPKHYLCFC QKLVDPPSDP WILPHSCGEI CNRPLKHNCG HHCLLLCHPG  180
PCPSCPKLVK TRCFCGDVED VRRCGFKDFS CNGVCSKLLD CGNHRCGESC HEGECPRCRA  240
RGVYRCQCGR EEEERECCDR SFRCEVACEK LLGCGRHLCG RGCHSGECGE CPLQGKRNCP  300
CGKRVYEGMA CDVVVPVCGA TCDKMLSCGF HRCPERCHRG PCIETCRIVV AKSCRCGSLR  360
KEVPCYQDLT CERKCQRMRD CGRHACKRRC CDGDCPPCSE VCDRRLRCKN HKCPAPCHRG  420
ACAPCPVMVT ISCACGETHF EVPCGVEMEQ KPPKCPKPCC ITPLCRHGSN SKPHKCHYGA  480
CPPCRLICEE EYPCDHKCKL RCHGPKPPAN PEFTLKPKKK KVNRQLDCTP GLPCPPCPEL  540
VWRSCVGEHI GAERMMVCSN KKEFPCKNLC GNLLACGNHY CTKTCHTLKS RSSSLGLQER  600
GESCEYCDLP CQKERKPTCP HSCPRPCHPG VCPPCKVLIK RSCHCGAMVH VFECLYYNSL  660
PEKEQMTVRS CGGPCHRKLP YCTHLCPEIC HPGQCPAPEK CYKKVTVRCG CQTLKKEWVC  720
QDVQAAYRSA GRDPKDISKN QYGLGLLPCD SNCRSKIKVA DTDLQHRRSK VSENKEPDAE  780
SSVPKRRKRR ERTKESTQIS RLQKTFGDLS ESPVAGYYLI HEIEIVNDES LNPELHSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1783789PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028057153.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2R6PLK60.0A0A2R6PLK6_ACTCH; NF-X1-type zinc finger protein
STRINGVIT_13s0067g00920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors