PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn141461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 310aa    MW: 34374 Da    PI: 7.8174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn141461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12134180354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+    +ve++k+L
  Achn141461 134 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALMGSVVEHVKDL 180
                 79*************************8.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-12133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10134180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-10134183No hitNo description
SMARTSM003532.3E-10137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.8E-5219260No hitNo description
CDDcd048733.47E-6219254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MACKSDLDSK VLEPLRESDW GQKKSGIPEA PTNLLDDGKT VLPKDGLAFQ FPGGVDLSTI  60
IFSFVFDNLN QGPPELYETS GHKYNGEWPE EGTWDQCQAA DLNTEYTLFQ SRGYHPWSMP  120
IEGVTEDRAA SSSKSHSQAE KRRRDRINAQ LATLRKLIPK SDKMDKAALM GSVVEHVKDL  180
KRKALEASKA VTVPTEVDEV TIDYFYLDQD KKNIFIKASV CCDDRPELFS ELTQALRGLN  240
LTTVRADMAS LGGRIKSILV MCAKDGKEGV CVNSVVQSLK GVLSRIASSS TASSYRMRSK  300
RQRFFLPSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300RMRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019433720.11e-100PREDICTED: transcription factor bHLH51-like
TrEMBLA0A2R6PLL60.0A0A2R6PLL6_ACTCH; Transcription factor like
STRINGAES711786e-97(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-40bHLH family protein