PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn141961

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 289aa MW: 33083.9 Da PI: 6.2666

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn141961	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.9	3.5e-48	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF P+deelv+eyL kk+++++l ++ e+d++++ePw+Lp+++k +++ewyfFs rd+kyatg r+nrat sgyWkatgkd++v++ +++ Achn141961 10 LPPGFRFYPSDEELVCEYLYKKIANEQLLK-GTLVEIDLHTCEPWQLPEAAKLNSREWYFFSFRDRKYATGYRTNRATISGYWKATGKDRTVHDLrTQA 107 79***********************766.78***********88888999********************************9974666 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 vg++ktLvfyk+rap+g k W+mh++rle Achn141961 108 IVGMRKTLVFYKNRAPHGIKIGWIMHDFRLE 138 7*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-57	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	55.624	10	156	IPR003441	NAC domain
Pfam	PF02365	4.0E-25	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGLRDVGASL PPGFRFYPSD EELVCEYLYK KIANEQLLKG TLVEIDLHTC EPWQLPEAAK 60 LNSREWYFFS FRDRKYATGY RTNRATISGY WKATGKDRTV HDLRTQAIVG MRKTLVFYKN 120 RAPHGIKIGW IMHDFRLENP HTPPKEDWVL CRVFHKGKGE SCDNHHHSPE NEFETTTILA 180 TSSHADQPLT FGQNYQTIPC LSQSPPHQTQ NPSSDPLLIN LSSPNPNFLH LSHQEMNNIR 240 SKCDDDYANA LFFDTAFGES SLGDPYGFSQ NLGDMRFDDD DDHSLFFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-46	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-46	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-46	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-46	9	156	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-46	9	156	19	168	NAC domain-containing protein 19
3swm_B	2e-46	9	156	19	168	NAC domain-containing protein 19
3swm_C	2e-46	9	156	19	168	NAC domain-containing protein 19
3swm_D	2e-46	9	156	19	168	NAC domain-containing protein 19
3swp_A	2e-46	9	156	19	168	NAC domain-containing protein 19
3swp_B	2e-46	9	156	19	168	NAC domain-containing protein 19
3swp_C	2e-46	9	156	19	168	NAC domain-containing protein 19
3swp_D	2e-46	9	156	19	168	NAC domain-containing protein 19
4dul_A	2e-46	9	156	16	165	NAC domain-containing protein 19
4dul_B	2e-46	9	156	16	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028111304.1	1e-131	NAC domain-containing protein 21/22-like
TrEMBL	A0A2R6P717	0.0	A0A2R6P717_ACTCH; NAC domain-containing protein
STRING	EOX94424	1e-120	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	6e-88	NAC domain containing protein 74