PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn143171

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 330aa MW: 37578.2 Da PI: 8.8462

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn143171	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	32.8	1.4e-10	161	182	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDg++WrKYG+K+vk+s++pr Achn143171 161 LDDGFKWRKYGKKMVKNSPNPR 182 59*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-11	147	182	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-8	154	183	IPR003657	WRKY domain
PROSITE profile	PS50811	13.976	156	218	IPR003657	WRKY domain
SMART	SM00774	1.4E-5	161	217	IPR003657	WRKY domain
Pfam	PF03106	4.3E-6	162	182	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MHSNCQAKTI RRSIGFSAAK IKNEFETSNA QEGGRERTIP WSHQGDIYFY TIRTYIFYQC 60 ELGTYRVDRS MDSPENGYAN QSNFELSEFF EFDEWEGEDP AMVVSRYPQN LVYAVNDQVS 120 YAGGSSIHHE GPSNRGTPSG REKKEIKEKV AFKTKSEVEI LDDGFKWRKY GKKMVKNSPN 180 PRPRHVLGNS KESVRNSEEE VTKIVIRRLK GSPVHEAPAL RSWEGLDIHS STPTCRRDCF 240 HVSNPWRPGC NGATLQLCQS PPFAEIFLKV KISSTANLIY SAISEQFVGE SAQEYIQRGK 300 TICKLRRCDH LSNAMIPIKH WSRKPPESN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006474454.1	1e-39	probable WRKY transcription factor 50 isoform X1
Refseq	XP_024033930.1	4e-40	probable WRKY transcription factor 50 isoform X1
STRING	XP_006474454.1	4e-39	(Citrus sinensis)
STRING	XP_006453040.1	3e-39	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2124	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	6e-16	WRKY DNA-binding protein 50