PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn143731
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 155aa    MW: 17846.6 Da    PI: 8.9045
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn143731genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.62.1e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Achn143731  9 KRIENKINRQVTFSKRRGGLLKKANEISVLCDAEVALIVFSHKGKLFEYST 59
                79***********************************************96 PP
2K-box21.68.8e-098811870100
       K-box  70 nellleqieelqkkekelqeenkaLrkklee 100
                 n+l++e+i+elqkkek+++e+n++L +k++e
  Achn143731  88 NQLMYESISELQKKEKAIKEQNNMLANKIKE 118
                 89**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.763161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-33281IPR002100Transcription factor, MADS-box
CDDcd002651.10E-41276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-31323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRGGLLK KANEISVLCD AEVALIVFSH KGKLFEYSTD  60
ACMEKILERY ERYSYAERDL AHDIQTPNQL MYESISELQK KEKAIKEQNN MLANKIKEME  120
NVMTRAEQCP WEQQNHVPSP SSLLPHPLPC LNIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-22174173MEF2 CHIMERA
6byy_B4e-22174173MEF2 CHIMERA
6byy_C4e-22174173MEF2 CHIMERA
6byy_D4e-22174173MEF2 CHIMERA
6bz1_A4e-22174173MEF2 CHIMERA
6bz1_B4e-22174173MEF2 CHIMERA
6bz1_C4e-22174173MEF2 CHIMERA
6bz1_D4e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold shock (e.g. from 22/17 to 16/12 degrees Celsius in light/night respectively). {ECO:0000269|PubMed:18332227}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1816648e-79AF181664.1 Actinidia deliciosa squamosa/apetala1 homolog mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018304.12e-64truncated transcription factor CAULIFLOWER A isoform X2
SwissprotB4YPW63e-63AP1A_BRAOA; Floral homeotic protein APETALA 1 A
SwissprotQ393713e-633AP1_BRAOL; Floral homeotic protein APETALA 1
SwissprotQ8GTF53e-63AP1A_BRAOB; Floral homeotic protein APETALA 1 A
SwissprotQ963563e-632AP1_BRAOT; Floral homeotic protein APETALA 1-2
TrEMBLA0A2R6QQV65e-83A0A2R6QQV6_ACTCH; Floral homeotic protein APETALA 1 A like
STRINGSolyc03g114830.2.11e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.17e-60MIKC_MADS family protein