PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn143971
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 605aa    MW: 67202 Da    PI: 6.0924
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn143971genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-17396449356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Achn143971 396 KKRRLNMEQVRTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 449
                 456899***********************************************9 PP
2HD-ZIP_I/II129.91e-41395485191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqv++LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k++n++L++++++L++e+
   Achn143971 395 EKKRRLNMEQVRTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAVKSDNDTLHAQNQKLQAEI 485
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1034731.44E-94112IPR020846Major facilitator superfamily domain
CDDcd061742.00E-4496IPR020846Major facilitator superfamily domain
Gene3DG3DSA:1.20.1250.203.2E-65100No hitNo description
SuperFamilySSF1034731.44E-9172216IPR020846Major facilitator superfamily domain
PROSITE profilePS5007116.941391451IPR001356Homeobox domain
SuperFamilySSF466895.99E-19393453IPR009057Homeodomain-like
SMARTSM003891.4E-18394455IPR001356Homeobox domain
CDDcd000862.36E-17396452No hitNo description
PfamPF000464.8E-15396449IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-19398458IPR009057Homeodomain-like
PRINTSPR000314.0E-5422431IPR000047Helix-turn-helix motif
PROSITE patternPS000270426449IPR017970Homeobox, conserved site
PRINTSPR000314.0E-5431447IPR000047Helix-turn-helix motif
PfamPF021832.1E-15451491IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MAAFVFIIGF WMLDLANNTV QGPARALLAD LSGPSQRNSA NAIFCSWMAV GNILGFSAGA  60
SGNWHRACCE ACGNLKAAFL VAVVFLTLCT VVTLYFAKEV PLMQKQPLLL SDSAPLLDDP  120
QHMLYDLSKS QTDGHVFDNA SGYKSDSGYQ TDRNLNNSES KTEEDQSESF NDSPGAVLVN  180
LLTSLRHLPP AMHSVLIVMA LTWLSWFPFF LFDTDWMGRE VYHGDPKGDV SQVQAYDQGV  240
REGTAIISLV SVREYSEGIQ HVIGGNGVTK IASLVVFALL GVPLSITYSV PFSVTAELTA  300
DTGGGQGLLH VYIFISRFYI FSLLSDRIAL LWSEEFVQLY RIGHRSSKSC NCHTSGVASL  360
LGKRSMSFSC TDLCDQETNI GDDDLSDDGS QLGGEKKRRL NMEQVRTLEK SFELGNKLEP  420
ERKMQLARAL GLQPRQIAIW FQNRRARWKT KQLEKDYDVL KRQFEAVKSD NDTLHAQNQK  480
LQAEILALKG RELPTESINL NKETEGSCSN RSENSSDIKL DISRTPAIDS PLSAHPTRRP  540
LFPPSVRPNT VAQLFQTSSR PDHHQLNGNN KIDQGVKEEG FCNMFCGIDD QTGFWPWLEQ  600
HHFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1443451RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtResponsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Probably involved in carpel maturation that leads to pod shatter and seed dispersal. {ECO:0000269|PubMed:11135120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding. {ECO:0000269|PubMed:14739351}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0675430.0JX067543.1 Actinidia chinensis clone 583663 sucrose transport protein (SUC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109280.11e-173sucrose transport protein SUC3 isoform X4
RefseqXP_028109281.11e-173sucrose transport protein SUC3 isoform X4
RefseqXP_028109282.11e-173sucrose transport protein SUC3 isoform X4
SwissprotO806051e-133SUC3_ARATH; Sucrose transport protein SUC3
TrEMBLA0A2R6QR030.0A0A2R6QR03_ACTCH; Sucrose transport protein
TrEMBLS4SLL70.0S4SLL7_ACTCH; Sucrose transport protein
STRINGXP_008339922.11e-162(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.18e-87HD-ZIP family protein
Publications ? help Back to Top
  1. Barker L, et al.
    SUT2, a putative sucrose sensor in sieve elements.
    Plant Cell, 2000. 12(7): p. 1153-64
    [PMID:10899981]
  2. Weise A, et al.
    A new subfamily of sucrose transporters, SUT4, with low affinity/high capacity localized in enucleate sieve elements of plants.
    Plant Cell, 2000. 12(8): p. 1345-55
    [PMID:10948254]
  3. Schulze W,Weise A,Frommer WB,Ward JM
    Function of the cytosolic N-terminus of sucrose transporter AtSUT2 in substrate affinity.
    FEBS Lett., 2000. 485(2-3): p. 189-94
    [PMID:11094165]
  4. Meyer S, et al.
    AtSUC3, a gene encoding a new Arabidopsis sucrose transporter, is expressed in cells adjacent to the vascular tissue and in a carpel cell layer.
    Plant J., 2000. 24(6): p. 869-82
    [PMID:11135120]
  5. Schulze WX,Reinders A,Ward J,Lalonde S,Frommer WB
    Interactions between co-expressed Arabidopsis sucrose transporters in the split-ubiquitin system.
    BMC Biochem., 2003. 4: p. 3
    [PMID:12689351]
  6. Meyer S, et al.
    Wounding enhances expression of AtSUC3, a sucrose transporter from Arabidopsis sieve elements and sink tissues.
    Plant Physiol., 2004. 134(2): p. 684-93
    [PMID:14739351]
  7. Chaudhuri B, et al.
    Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips.
    Plant J., 2008. 56(6): p. 948-62
    [PMID:18702670]
  8. Lei M, et al.
    Genetic and genomic evidence that sucrose is a global regulator of plant responses to phosphate starvation in Arabidopsis.
    Plant Physiol., 2011. 156(3): p. 1116-30
    [PMID:21346170]
  9. Martínez-Silva AV,Aguirre-Martínez C,Flores-Tinoco CE,Alejandri-Ramírez ND,Dinkova TD
    Translation initiation factor AteIF(iso)4E is involved in selective mRNA translation in Arabidopsis thaliana seedlings.
    PLoS ONE, 2012. 7(2): p. e31606
    [PMID:22363683]
  10. Chaparro JM, et al.
    Root exudation of phytochemicals in Arabidopsis follows specific patterns that are developmentally programmed and correlate with soil microbial functions.
    PLoS ONE, 2013. 8(2): p. e55731
    [PMID:23383346]
  11. Gong X, et al.
    Arabidopsis AtSUC2 and AtSUC4, encoding sucrose transporters, are required for abiotic stress tolerance in an ABA-dependent pathway.
    Physiol Plant, 2015. 153(1): p. 119-36
    [PMID:24814155]
  12. Ma QJ, et al.
    Molecular cloning and functional characterization of the apple sucrose transporter gene MdSUT2.
    Plant Physiol. Biochem., 2016. 109: p. 442-451
    [PMID:27816825]
  13. Xu Q,Chen S,Yunjuan R,Chen S,Liesche J
    Regulation of Sucrose Transporters and Phloem Loading in Response to Environmental Cues.
    Plant Physiol., 2018. 176(1): p. 930-945
    [PMID:29158330]