PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn144171
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 217aa    MW: 24032.8 Da    PI: 9.0055
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn144171genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001384106123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C k F ++  L  H++ H
  Achn144171  84 FVCPYCFKEFGNSQALGGHQNAH 106
                 89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-579110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.47E-680111No hitNo description
PROSITE profilePS5015710.82484111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MKKDVSNLLS LTGDGDTEQP SKSCAEKKLR LFGFELDPNK NHQTSLKVSV EGDESANSST  60
SVSSGKEKSL KEKRSINEPG KKKFVCPYCF KEFGNSQALG GHQNAHKKER MKKKRLQIQA  120
RKASINHYLQ PFHQNSHSFS YFYDPFCYAS DFSQNVSQIS FGGDDHDAHL GGCQPPNWHD  180
VPVNVAAFQP DTCGFILTRG DRSGESQPVV FKPGSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631292.29e-74PREDICTED: zinc finger protein 5 isoform X2
RefseqXP_007044496.15e-74PREDICTED: zinc finger protein 5
TrEMBLA0A2R6P3M31e-122A0A2R6P3M3_ACTCH; Zinc finger protein
STRINGVIT_01s0026g00850.t012e-73(Vitis vinifera)
STRINGEOY003282e-73(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-15zinc finger protein 5