PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn145561

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WOX

Protein Properties

Length: 344aa MW: 38882.7 Da PI: 7.1526

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn145561	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.4	1.8e-21	97	157	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Achn145561 97 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 157 89***************99************************************97 PP
2	Wus_type_Homeobox	101	8.6e-33	97	159	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Achn145561 97 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 159 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.094	93	158	IPR001356	Homeobox domain
SMART	SM00389	5.1E-15	95	162	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-19	95	161	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.6E-18	96	162	IPR009057	Homeodomain-like
Pfam	PF00046	2.8E-19	97	157	IPR001356	Homeobox domain
CDD	cd00086	9.26E-14	97	159	No hit	No description
Pfam	PF10181	6.7E-16	253	316	IPR019328	GPI-GlcNAc transferase complex, PIG-H component, conserved domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0017176	Molecular Function	phosphatidylinositol N-acetylglucosaminyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDWENQQKQQ QNQQQQHEEL TNGNNNNSNN NGIFVKVMTD EQMEILRKQI VAYATICEQL 60 VEMHKSLTSH TDLSGARLGN LYCDPFVTSV GHKITGRQRW TPTPVQLQIL ERIFDQGNGT 120 PSKQKIKEIT SELSQHGQIS ETNVYNWFQN RRARSKRKQQ VTAPNNAESE VETEVESSNE 180 KKTKSEDFQS QHNQATRAED LCFQNPEISS GMHSVDSQSN KVEPMFPSNG SSKPARSLGQ 240 MSFYDTMLSN PKSIIIMSAF GVQLETQYGS GRTVRRFIPI DKILKPVLNE CVTPVTCYWS 300 LSLIVRGDEE LTLVFKELRP PVKMLIPIWK ALCAAATNSP NDS*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDWENQQKQQ QNQQQQHEEL TNGNNNNSNN NGIFVKVMTD EQMEILRKQI VAYATICEQL  60
VEMHKSLTSH TDLSGARLGN LYCDPFVTSV GHKITGRQRW TPTPVQLQIL ERIFDQGNGT  120
PSKQKIKEIT SELSQHGQIS ETNVYNWFQN RRARSKRKQQ VTAPNNAESE VETEVESSNE  180
KKTKSEDFQS QHNQATRAED LCFQNPEISS GMHSVDSQSN KVEPMFPSNG SSKPARSLGQ  240
MSFYDTMLSN PKSIIIMSAF GVQLETQYGS GRTVRRFIPI DKILKPVLNE CVTPVTCYWS  300
LSLIVRGDEE LTLVFKELRP PVKMLIPIWK ALCAAATNSP NDS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	158	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028109617.1	1e-139	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	3e-82	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2R6RIY6	0.0	A0A2R6RIY6_ACTCH; WUSCHEL-related homeobox like
STRING	Solyc02g082670.2.1	1e-123	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-76	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]