PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn146211
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 251aa    MW: 28462.5 Da    PI: 6.6819
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn146211genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-10116220192
                 EEEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-S CS
          B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldg 86 
                 f+k+lt  dv+k  grl++ k+ +e++           ++++ +++++ ++ ++g ++ +k++++ ++ + vlt+GW+eF  +n+ k  +D v++ + +
  Achn146211 116 FEKQLTDTDVNKGqGRLSIAKELVEKFvkplmgeeerrSLEHSQETQVDVYGSKGIRYPMKFKIWSSK-TNVLTSGWNEFRGDNEFKaLNDWVTLWVFR 213
                 99********99889****************9888888666668999**********99999889887.569**************9558888766444 PP

                 S.SEE.. CS
          B3  87 r.sefel 92 
                 + ++++l
  Achn146211 214 HkETEKL 220
                 4344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-11116223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-11116222IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-8116224IPR003340B3 DNA binding domain
CDDcd100171.15E-9116225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEEDSEANNN NNNGVGNNHP EETQEELREK NFAALLLVTM KYLIVDEQTS ISLEALKTEA  60
HCQHWMKGCE SFKTAIKNGL DPALPELGNP IDGLTPPKLP PIKVLEGLIG ECGVPFEKQL  120
TDTDVNKGQG RLSIAKELVE KFVKPLMGEE ERRSLEHSQE TQVDVYGSKG IRYPMKFKIW  180
SSKTNVLTSG WNEFRGDNEF KALNDWVTLW VFRHKETEKL CFVMIARTFP TGKLVTKRSQ  240
KKRKAEELNK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6QUZ61e-107A0A2R6QUZ6_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64301214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.14e-19B3 family protein