PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn146261

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 262aa MW: 28527.7 Da PI: 6.5953

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn146261	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00027	156	194	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Achn146261 156 RKEKLGDRITSLHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 194 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.573	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.30E-6	154	198	No hit	No description
SuperFamily	SSF47459	7.46E-10	154	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-8	158	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEPPTKISQY GPDTSHSQTL QFSREGGLVG EEEKSGMSHV QAKKLENWEE QVLHQQATCG 60 EIKQDHNYVY GHGSVDHNFQ APTKPIANWS QMMPASSPTS CVTSLSSNML DFSNNKADRS 120 HPPPDRSSEC NSTATGGALK KARVQPSSTP TTFKVRKEKL GDRITSLHQL VSPFGKTDTA 180 SVLLEAIGYI RFLQSQVEVQ GERNCLFPED PGQDSHGEPN KDLRSRGLCL VPISSTMQVG 240 SDNGADYWAP ALSGGFQSKF C*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284145.1	1e-121	PREDICTED: transcription factor bHLH68
Swissprot	Q8S3D1	7e-66	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2R6Q4U8	1e-166	A0A2R6Q4U8_ACTCH; Transcription factor bHLH68 like
STRING	VIT_11s0016g03560.t01	1e-120	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	5e-68	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]