PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn146491
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 492aa    MW: 53142.3 Da    PI: 8.064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn146491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57e-11133157226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C +++ t tCk+Gd+CkF H+
  Achn146491 133 GEKDCAHYMLTRTCKFGDSCKFDHP 157
                 7889********************8 PP
2zf-CCCH283.7e-09171190827
                 GGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                 +f++t  CkyG rCkF+H++
  Achn146491 171 YFLKTQRCKYGLRCKFNHPK 190
                 8*****************96 PP
3zf-CCCH27.45.6e-09226245827
                 GGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                 f+ +tG Ck+G++CkF+H++
  Achn146491 226 FYVKTGKCKFGATCKFHHPK 245
                 899***************96 PP
4zf-CCCH18.53.6e-063763891427
                 --TTTTT-SS-SSS CS
     zf-CCCH  14 tCkyGdrCkFaHgp 27 
                  CkyG++C+++H++
  Achn146491 376 SCKYGATCRYNHPE 389
                 6***********96 PP
5zf-CCCH38.12.6e-12443464627
                 -SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                 C+++++tG CkyG++CkF H+p
  Achn146491 443 CPYYMKTGACKYGATCKFDHPP 464
                 ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.507131159IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011131158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5132158IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8133157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4137156IPR000571Zinc finger, CCCH-type
SMARTSM003560.15167190IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6171190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4171190IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.075171191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.526207246IPR000571Zinc finger, CCCH-type
SMARTSM003560.75219245IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6226245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4226244IPR000571Zinc finger, CCCH-type
SMARTSM003562.2364389IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.826368390IPR000571Zinc finger, CCCH-type
PfamPF146081377388No hitNo description
PROSITE profilePS5010315.15437465IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6437464IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6441464IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10443464IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5443462IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MANQLYGYNP SSGGSSSYGG GASNVYSSRS ALADTYLSVD SSLSRYLNAD PSSSLSDRGI  60
GSSMLFSQSD ALRFSSASAR VPSIGVTQTS WPGVDIGATA SDPLVSGIKR PSESKRLRYE  120
SASNLPIYPQ RPGEKDCAHY MLTRTCKFGD SCKFDHPIWV PEGGIPDWKE YFLKTQRCKY  180
GLRCKFNHPK DKMVPSENAG YSALPERPSE PPCAVCYFAL LVEAQFYVKT GKCKFGATCK  240
FHHPKDIQLP SAGQDNGSDA HIETAIINDG NTGELKLTNP LFTPALLHNS KGLPIRLFGF  300
FYMVGNLDGL VTCTISMLLE FGKPTNKPKK GGELFQHLVP FTVVNTYPDS DLIACYKNSQ  360
GSYSFIFLCS FPLPISCKYG ATCRYNHPER YGCAAINPLA VAIGPGIMAS PAAHLNIGVV  420
NPAASILQFI DPRLTQTTGA VHCPYYMKTG ACKYGATCKF DHPPPGEVMV MATSTSVGGE  480
GNQNETVEQQ Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818009e-63LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132559e-63LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079961.11e-138zinc finger CCCH domain-containing protein 37 isoform X1
TrEMBLA0A2R6QT520.0A0A2R6QT52_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_010260864.11e-122(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.17e-89floral homeotic protein (HUA1)